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BaseInfo

ncRNA ID	novel_zma_miR8743
Species	Zea mays
Class	miRNA
Genome position	Chr7:45122783-45122910 [-]
Reference genome	RefGen_v4
Source	SRR4237221;SRR4237225
Length	21
Mature sequence(if miRNA)	108 - UGUAGGGCUAGUUUGGGAACC - 128
Stem-loop(if miRNA)	---UG                    C                C                  AUG      UAGGGCUAGUUUGGGAACCC AUUUUCCCAAGGGAUU CUAUUUUUCCAAGGGAAA   A      |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||   A      AUCCCGAUCAAACCCUUGGG UAAAAGGGUUCCCUAA GAUAAAAGGGUUCCCUUU   C GGAUA                    U                A                  AAU
Stem-loop sequence	UGUAGGGCUAGUUUGGGAACCCCAUUUUCCCAAGGGAUUCCUAUUUUUCCAAGGGAAAAUGAACUAAUUUCCCUUGGGAAAAUAGAAAUCCCUUGGGAAAAUUGGGUUCCCAAACUAGCCCUAAUAGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020539411.1	ncRNA:21   CCAAGGGUUUGAUCGGGAUGU   1   |||||||||||||||||||*| targets:3528   GGUUCCCAAACUAGCCCUAAA   3548 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:21   CCAAGGGUUUGAUCGGGAUGU   1   |||||||||||||||||||*| targets:3563   GGUUCCCAAACUAGCCCUAAA   3583 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008663412.2	ncRNA:21   CCAAGGGUUUGAUCGGGAUGU   1   *||||=||||||||=|||||| targets:66   AGUUCUCAAACUAGUCCUACA   86 Target Full Sequence	2.5	PREDICTED: Zea mays Putative pentatricopeptide repeat family protein (LOC100273844), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020544949.1	ncRNA:21   CCAAGGGUUUGAUCGGGAUGU   1   *||||=||||||||=|||||| targets:67   AGUUCUCAAACUAGUCCUACA   87 Target Full Sequence	2.5	PREDICTED: Zea mays Putative pentatricopeptide repeat family protein (LOC100273844), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ068772.1	ncRNA:21   CCAAGGGUUUGAUCGGGAUGU   1   ||||=||||||||||||||*| targets:53   GGUUUCCAAACUAGCCCUAAA   73 Target Full Sequence	2.5	TSA: Zea mays contig04407, mRNA sequence	NA	coding protein	psRNATarget
EU951374.1	ncRNA:21   CCAAGGGUUUGAUCGGGAUGU   1   ||||=||||||||||||||*| targets:420   GGUUUCCAAACUAGCCCUAAA   440 Target Full Sequence	2.5	Zea mays clone 697858 mRNA sequence	NA	coding protein	psRNATarget
XM_020552563.1	ncRNA:21   CCAAGGGUUUGAUCGGGA-UGU   1   *|||||||||||||||||-||| targets:461   AGUUCCCAAACUAGCCCUUACA   482 Target Full Sequence	3.0	PREDICTED: Zea mays probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10 (LOC103653427), transcript variant X2, mRNA	NA	coding protein	psRNATarget
LQ238393.1	ncRNA:21   CCAAGGGUUUGAUCGGGAUGU   1   *||||||||||||||||||** targets:111   UGUUCCCAAACUAGCCCUAAU   131 Target Full Sequence	2.5	Sequence 4388 from Patent EP2985353	NA	coding protein	psRNATarget
JB166724.1	ncRNA:21   CCAAGGGUUUGAUCGGGAUGU   1   *||||||||||||||||||** targets:111   UGUUCCCAAACUAGCCCUAAU   131 Target Full Sequence	2.5	Sequence 4388 from Patent EP2559767	NA	coding protein	psRNATarget
HI406263.1	ncRNA:21   CCAAGGGUUUGAUCGGGAUGU   1   *||||||||||||||||||** targets:111   UGUUCCCAAACUAGCCCUAAU   131 Target Full Sequence	2.5	Sequence 4388 from Patent EP2074227	NA	coding protein	psRNATarget
EU973119.1	ncRNA:21   CCAAGGGUUUGAUCGGGAUGU   1   *||||||||||||||||||*= targets:1453   UGUUCCCAAACUAGCCCUAAG   1473 Target Full Sequence	2.5	Zea mays clone 393646 mRNA sequence	NA	coding protein	psRNATarget
NM_001196460.1	ncRNA:21   CCAAGGGUUUGAUCGGGAUGU   1   *||||||||||||||||||*= targets:1455   UGUUCCCAAACUAGCCCUAAG   1475 Target Full Sequence	2.5	Zea mays Mosaic virus helicase domain-binding protein (LOC100501804), mRNA	NA	coding protein	psRNATarget
BT086269.1	ncRNA:21   CCAAGGGUUUGAUCGGGAUGU   1   *||||||||||||||||||*= targets:1455   UGUUCCCAAACUAGCCCUAAG   1475 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0140P03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008676590.2	ncRNA:21   CCAAGGGUUUGAUCGGGAUGU   1   *|||=||||||||||||||*| targets:4101   AGUUUCCAAACUAGCCCUAAA   4121 Target Full Sequence	2.5	PREDICTED: Zea mays Asparagine synthase family protein (si683017d09), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI406214.1	ncRNA:21   CCAAGGGUUUGAUCGGGAUGU   1   ||*||||||||||||||||*| targets:42   GGCUCCCAAACUAGCCCUAAA   62 Target Full Sequence	2.5	Sequence 4339 from Patent EP2074227	NA	coding protein	psRNATarget
JB166675.1	ncRNA:21   CCAAGGGUUUGAUCGGGAUGU   1   ||*||||||||||||||||*| targets:42   GGCUCCCAAACUAGCCCUAAA   62 Target Full Sequence	2.5	Sequence 4339 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238344.1	ncRNA:21   CCAAGGGUUUGAUCGGGAUGU   1   ||*||||||||||||||||*| targets:42   GGCUCCCAAACUAGCCCUAAA   62 Target Full Sequence	2.5	Sequence 4339 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008677028.2	ncRNA:21   CCAAGGGUUUGAUCGGGAUGU   1   ||*||||||||||||||||*| targets:2459   GGCUCCCAAACUAGCCCUAAA   2479 Target Full Sequence	2.5	PREDICTED: Zea mays SCP1-like small phosphatase 4b (LOC103651391), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020550525.1	ncRNA:21   CCAAGGGUUUGAUCGGGAUGU   1   ||*||||||||||||||||*| targets:2477   GGCUCCCAAACUAGCCCUAAA   2497 Target Full Sequence	2.5	PREDICTED: Zea mays SCP1-like small phosphatase 4b (LOC103651391), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020542483.1	ncRNA:21   CCAAGGGUUUGAUCGGGAUGU   1   *|||*||||||||||||||*| targets:3192   UGUUGCCAAACUAGCCCUAAA   3212 Target Full Sequence	2.5	PREDICTED: Zea mays protein TPR1-like (LOC103634695), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020542482.1	ncRNA:21   CCAAGGGUUUGAUCGGGAUGU   1   *|||*||||||||||||||*| targets:3681   UGUUGCCAAACUAGCCCUAAA   3701 Target Full Sequence	2.5	PREDICTED: Zea mays protein TPR1-like (LOC103634695), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020542481.1	ncRNA:21   CCAAGGGUUUGAUCGGGAUGU   1   *|||*||||||||||||||*| targets:3693   UGUUGCCAAACUAGCCCUAAA   3713 Target Full Sequence	2.5	PREDICTED: Zea mays protein TPR1-like (LOC103634695), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020542480.1	ncRNA:21   CCAAGGGUUUGAUCGGGAUGU   1   *|||*||||||||||||||*| targets:3729   UGUUGCCAAACUAGCCCUAAA   3749 Target Full Sequence	2.5	PREDICTED: Zea mays protein TPR1-like (LOC103634695), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU946741.1	ncRNA:21   CCAAGGGUUUGAUCGGGAUGU   1   ***||||||||*||||||||| targets:498   UUGUCCCAAACGAGCCCUACA   518 Target Full Sequence	2.5	Zea mays clone 323233 mRNA sequence	NA	coding protein	psRNATarget