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BaseInfo

ncRNA ID	novel_zma_miR8741
Species	Zea mays
Class	miRNA
Genome position	Chr7:75831870-75832006 [-]
Reference genome	RefGen_v4
Source	SRR4237221;SRR4237222;SRR4237224;SRR4237227;SRR5105961
Length	24
Mature sequence(if miRNA)	1 - AAUGAGAAUAACCGAACAAGGCCU - 24
Stem-loop(if miRNA)	--  -A      U   C      A               C U     A U   UUUU   CCA   C   UCA   GC  UGUUCG UUA UUCUCA UCCAUGUGGAUUGGA G GAUUG G GAG    AAU   UAG AAG   A   ||  |||||| ||| |||||| ||||||||||||||| | ||||| | |||    |||   ||| |||   CG  ACAAGC AAU AAGAGU AGGUGCACCUAACCU C CUAAC C CUU    UUA   AUC UUC   A UC  GA      C   -      A               A C     - -   --UU   ---   C   UUA
Stem-loop sequence	GCAUGUUCGUUUACUUCUCAAUCCAUGUGGAUUGGACGUGAUUGAGUGAGUUUUAAUCCAUAGCAAGUCAAAAUUCUUCCUAAUUUUUUCCCAAUCCCAUCCAAUCCACGUGGAAUGAGAAUAACCGAACAAGGCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB167116.1	ncRNA:24   UCCGGAACAAGCCAAUAAGAGUAA   1   |||||||||||||||||||||||| targets:64   AGGCCUUGUUCGGUUAUUCUCAUU   87 Target Full Sequence	0.0	Sequence 4780 from Patent EP2559767	NA	coding protein	psRNATarget
HI406655.1	ncRNA:24   UCCGGAACAAGCCAAUAAGAGUAA   1   |||||||||||||||||||||||| targets:64   AGGCCUUGUUCGGUUAUUCUCAUU   87 Target Full Sequence	0.0	Sequence 4780 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238785.1	ncRNA:24   UCCGGAACAAGCCAAUAAGAGUAA   1   |||||||||||||||||||||||| targets:64   AGGCCUUGUUCGGUUAUUCUCAUU   87 Target Full Sequence	0.0	Sequence 4780 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001112112.2	ncRNA:24   UCCGGAACAAGCCAAUAAGAGUAA   1   ||||=||||||||||||||*|||| targets:1701   AGGCUUUGUUCGGUUAUUCCCAUU   1724 Target Full Sequence	1.5	Zea mays nitrilase 1 (NIT1), transcript variant 1, mRNA	NA	coding protein	psRNATarget
AY156979.1	ncRNA:24   UCCGGAACAAGCCAAUAAGAGUAA   1   ||||=||||||||||||||*|||| targets:1709   AGGCUUUGUUCGGUUAUUCCCAUU   1732 Target Full Sequence	1.5	Zea mays nitrilase 1 (NIT1) mRNA, complete cds	NA	coding protein	psRNATarget
XM_008646066.2	ncRNA:24   UCCGGAACAAGCCAAUAAGAGUAA   1   ||||=||||||||||||||*|||| targets:1742   AGGCUUUGUUCGGUUAUUCCCAUU   1765 Target Full Sequence	1.5	PREDICTED: Zea mays nitrilase 1 (NIT1), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020537588.1	ncRNA:24   UCCGGAACAAGCCAAUAAGAGUAA   1   ||||=||||||||||||||*|||| targets:1761   AGGCUUUGUUCGGUUAUUCCCAUU   1784 Target Full Sequence	1.5	PREDICTED: Zea mays nitrilase 1 (NIT1), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008646063.2	ncRNA:24   UCCGGAACAAGCCAAUAAGAGUAA   1   ||||=||||||||||||||*|||| targets:1779   AGGCUUUGUUCGGUUAUUCCCAUU   1802 Target Full Sequence	1.5	PREDICTED: Zea mays nitrilase 1 (NIT1), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008646064.2	ncRNA:24   UCCGGAACAAGCCAAUAAGAGUAA   1   ||||=||||||||||||||*|||| targets:1810   AGGCUUUGUUCGGUUAUUCCCAUU   1833 Target Full Sequence	1.5	PREDICTED: Zea mays nitrilase 1 (NIT1), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020537587.1	ncRNA:24   UCCGGAACAAGCCAAUAAGAGUAA   1   ||||=||||||||||||||*|||| targets:1828   AGGCUUUGUUCGGUUAUUCCCAUU   1851 Target Full Sequence	1.5	PREDICTED: Zea mays nitrilase 1 (NIT1), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT066963.1	ncRNA:24   UCCGGAACAAGCCAAUAAGAGUAA   1   ||||=||||||||||||||*|||| targets:3091   AGGCUUUGUUCGGUUAUUCCCAUU   3114 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0126L13 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008656621.2	ncRNA:24   UCCG-----GAACAAGCCAAUAAGAGUAA   1   |||=-----||||||||||||*||||||| targets:3360   AGGUUAGAACUUGUUCGGUUAGUCUCAUU   3388 Target Full Sequence	1.5	PREDICTED: Zea mays lon protease homolog, mitochondrial-like (LOC103634553), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008656616.2	ncRNA:24   UCCG-----GAACAAGCCAAUAAGAGUAA   1   |||=-----||||||||||||*||||||| targets:3447   AGGUUAGAACUUGUUCGGUUAGUCUCAUU   3475 Target Full Sequence	1.5	PREDICTED: Zea mays lon protease homolog, mitochondrial-like (LOC103634553), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ101233.1	ncRNA:24   UCCGGAACAAGCCAAUAAGAGUAA   1   |*|*|||||||||||||||*|||| targets:38   AAGACUUGUUCGGUUAUUCCCAUU   61 Target Full Sequence	1.5	TSA: Zea mays contig36889, mRNA sequence	NA	coding protein	psRNATarget
XM_008667120.2	ncRNA:24   UCCGGAACAAGCCAAUAAGAGUAA   1   |||**|||||||||||||||||*| targets:860   AGGAAUUGUUCGGUUAUUCUCAAU   883 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100501429 (LOC100501429), mRNA	NA	coding protein	psRNATarget