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BaseInfo

ncRNA ID novel_zma_miR8736
Species Zea mays
Class miRNA
Genome position Chr7:130165559-130165732 [-]
Reference genome RefGen_v4
Source SRR4237221
Length 24
Mature sequence(if miRNA) 1 - AAUUAGUCCUUAGAAACCAAACAC - 24
Stem-loop(if miRNA) --                     A          U                   -   U                          AAA
  GUUUGGUUUCUAGGGACUAAU UUUAGUUCCU CAUUUUAUUCCAUUUUAGU CUA AAAUUGUCAAAUAUAGGAACUAAAAU   A
  ||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||
  CAAACCAAAGAUUCCUGAUUA AAAUCAAGGA GUAAAAUAAGGUAAAAUCA GGU UUUAACAGUUUAUAUCUUUGAUUUUG   U
CA                     A          U                   A   -                          AUA
Stem-loop sequence GUUUGGUUUCUAGGGACUAAUAUUUAGUUCCUUCAUUUUAUUCCAUUUUAGUCUAUAAAUUGUCAAAUAUAGGAACUAAAAUAAAAUAUAGUUUUAGUUUCUAUAUUUGACAAUUUUGGAACUAAAAUGGAAUAAAAUGUAGGAACUAAAAAUUAGUCCUUAGAAACCAAACAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020545045.1
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  ||||||||||||||=|||||||||
targets:1922   GUGUUUGGUUUCUAGGGACUAAUU   1945

1.5 PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA NA coding protein psRNATarget
BT085047.1
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  ||||||||||||||=|||||||||
targets:1193   GUGUUUGGUUUCUAGGGACUAAUU   1216

1.5 Zea mays full-length cDNA clone ZM_BFb0232J05 mRNA, complete cds NA coding protein psRNATarget
BT088358.1
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  ||||||||||||||=|||||||||
targets:1139   GUGUUUGGUUUCUAGGGACUAAUU   1162

1.5 Zea mays full-length cDNA clone ZM_BFc0155C19 mRNA, complete cds NA coding protein psRNATarget
NM_001313850.1
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  ||||||||||||||=|||||||||
targets:1139   GUGUUUGGUUUCUAGGGACUAAUU   1162

1.5 Zea mays voltage-gated potassium channel beta subunit (LOC100282429), mRNA NA coding protein psRNATarget
BT036582.1
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  ||||||||||||||=|||||||||
targets:815   GUGUUUGGUUUCUAGGGACUAAUU   838

1.5 Zea mays full-length cDNA clone ZM_BFb0124H18 mRNA, complete cds NA coding protein psRNATarget
NM_001139183.1
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  ||||||||||||||=|||||||||
targets:815   GUGUUUGGUUUCUAGGGACUAAUU   838

1.5 Zea mays hypothetical protein (LOC100194130), mRNA NA coding protein psRNATarget
XM_020553397.1
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  ||||||||||||||=|||||||||
targets:552   GUGUUUGGUUUCUAGGGACUAAUU   575

1.5 PREDICTED: Zea mays SANT/MYB protein (LOC100284980), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008655750.2
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  *|||||||||||||||||||||||
targets:2415   AUGUUUGGUUUCUAAGGACUAAUU   2438

0.0 PREDICTED: Zea mays PHD finger protein MALE STERILITY 1-like (LOC103643406), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008656457.2
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  |||||||||||||||||||||||*
targets:1645   GUGUUUGGUUUCUAAGGACUAAUA   1668

1.0 PREDICTED: Zea mays programmed cell death protein 2 (LOC103634523), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020546793.1
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  *|||||||||||||=|||||||||
targets:3566   AUGUUUGGUUUCUAGGGACUAAUU   3589

1.5 PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546794.1
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  *|||||||||||||=|||||||||
targets:3529   AUGUUUGGUUUCUAGGGACUAAUU   3552

1.5 PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020546795.1
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  *|||||||||||||=|||||||||
targets:3479   AUGUUUGGUUUCUAGGGACUAAUU   3502

1.5 PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020546796.1
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  *|||||||||||||=|||||||||
targets:3404   AUGUUUGGUUUCUAGGGACUAAUU   3427

1.5 PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020550311.1
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  ||||||||||||||=||||||||*
targets:2447   GUGUUUGGUUUCUAGGGACUAAUG   2470

2.5 PREDICTED: Zea mays zinc finger CCCH domain-containing protein 67-like (LOC103650585), mRNA NA coding protein psRNATarget
XM_020542419.1
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  ||||||||||||||=||||||||*
targets:2144   GUGUUUGGUUUCUAGGGACUAAUG   2167

2.5 PREDICTED: Zea mays ADP,ATP carrier protein 2, chloroplastic (LOC103637385), mRNA NA coding protein psRNATarget
XM_020547858.1
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  ||||||||||||||=||||||||*
targets:1541   GUGUUUGGUUUCUAGGGACUAAUG   1564

2.5 PREDICTED: Zea mays uncharacterized LOC100382535 (LOC100382535), transcript variant X3, mRNA NA coding protein psRNATarget
EU956227.1
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  ||||||||||||||=||||||||*
targets:1242   GUGUUUGGUUUCUAGGGACUAAUG   1265

2.5 Zea mays clone 1559264 mRNA sequence NA coding protein psRNATarget
XM_020543841.1
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  ||||||||||||||=||||||||*
targets:920   GUGUUUGGUUUCUAGGGACUAAUG   943

2.5 PREDICTED: Zea mays lo1 pI allergen homolog 1 (lop1), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020542840.1
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  ||||||||||||||=||||||||*
targets:972   GUGUUUGGUUUCUAGGGACUAAUG   995

2.5 PREDICTED: Zea mays hypothetical protein (LOC103636172), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008667360.2
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  ||||||||||||||=||||||||*
targets:1146   GUGUUUGGUUUCUAGGGACUAAUG   1169

2.5 PREDICTED: Zea mays GNAT transcription factor (LOC103644167), mRNA NA coding protein psRNATarget
XM_008650754.2
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  ||||||||||||||=||||||||*
targets:1155   GUGUUUGGUUUCUAGGGACUAAUG   1178

2.5 PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008650753.2
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  ||||||||||||||=||||||||*
targets:1149   GUGUUUGGUUUCUAGGGACUAAUG   1172

2.5 PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008650758.2
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  ||||||||||||||=||||||||*
targets:1146   GUGUUUGGUUUCUAGGGACUAAUG   1169

2.5 PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008650759.2
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  ||||||||||||||=||||||||*
targets:1137   GUGUUUGGUUUCUAGGGACUAAUG   1160

2.5 PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X4, mRNA NA coding protein psRNATarget
BT018349.1
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  *|||||||||||||=|||||||||
targets:560   AUGUUUGGUUUCUAGGGACUAAUU   583

1.5 Zea mays clone EL01T0403E10.c mRNA sequence NA coding protein psRNATarget
EZ052166.1
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  ||||||||||||||=||||||||*
targets:752   GUGUUUGGUUUCUAGGGACUAAUG   775

2.5 TSA: Zea mays contig53286, mRNA sequence NA coding protein psRNATarget
EU942443.1
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  ||||||||||||||=||||||||*
targets:465   GUGUUUGGUUUCUAGGGACUAAUG   488

2.5 Zea mays clone 1501876 mRNA sequence NA coding protein psRNATarget
EU941753.1
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  *|||||||||||||=|||||||||
targets:5   AUGUUUGGUUUCUAGGGACUAAUU   28

1.5 Zea mays clone 1469712 mRNA sequence NA coding protein psRNATarget
JB163501.1
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  ||||||||||||||=||||||||*
targets:4   GUGUUUGGUUUCUAGGGACUAAUG   27

2.5 Sequence 1165 from Patent EP2559767 NA coding protein psRNATarget
LQ235170.1
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  ||||||||||||||=||||||||*
targets:4   GUGUUUGGUUUCUAGGGACUAAUG   27

2.5 Sequence 1165 from Patent EP2985353 NA coding protein psRNATarget
HI403040.1
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  ||||||||||||||=||||||||*
targets:4   GUGUUUGGUUUCUAGGGACUAAUG   27

2.5 Sequence 1165 from Patent EP2074227 NA coding protein psRNATarget
HI403052.1
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  ||||||||||||||=||||||||*
targets:2   GUGUUUGGUUUCUAGGGACUAAUC   25

2.5 Sequence 1177 from Patent EP2074227 NA coding protein psRNATarget
LQ235182.1
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  ||||||||||||||=||||||||*
targets:2   GUGUUUGGUUUCUAGGGACUAAUC   25

2.5 Sequence 1177 from Patent EP2985353 NA coding protein psRNATarget
JB163513.1
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  ||||||||||||||=||||||||*
targets:2   GUGUUUGGUUUCUAGGGACUAAUC   25

2.5 Sequence 1177 from Patent EP2559767 NA coding protein psRNATarget
HI403055.1
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  ||||||||||||||=||||||||*
targets:2   GUGUUUGGUUUCUAGGGACUAAUG   25

2.5 Sequence 1180 from Patent EP2074227 NA coding protein psRNATarget
LQ235185.1
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  ||||||||||||||=||||||||*
targets:2   GUGUUUGGUUUCUAGGGACUAAUG   25

2.5 Sequence 1180 from Patent EP2985353 NA coding protein psRNATarget
JB163502.1
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  ||||||||||||||=||||||||*
targets:2   GUGUUUGGUUUCUAGGGACUAAUG   25

2.5 Sequence 1166 from Patent EP2559767 NA coding protein psRNATarget
HI403041.1
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  ||||||||||||||=||||||||*
targets:2   GUGUUUGGUUUCUAGGGACUAAUG   25

2.5 Sequence 1166 from Patent EP2074227 NA coding protein psRNATarget
LQ235171.1
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  ||||||||||||||=||||||||*
targets:2   GUGUUUGGUUUCUAGGGACUAAUG   25

2.5 Sequence 1166 from Patent EP2985353 NA coding protein psRNATarget
JB163516.1
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  ||||||||||||||=||||||||*
targets:2   GUGUUUGGUUUCUAGGGACUAAUG   25

2.5 Sequence 1180 from Patent EP2559767 NA coding protein psRNATarget
LQ235177.1
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  ||||||||||||||=||||||||*
targets:60   GUGUUUGGUUUCUAGGGACUAAUG   83

2.5 Sequence 1172 from Patent EP2985353 NA coding protein psRNATarget
HI403047.1
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  ||||||||||||||=||||||||*
targets:60   GUGUUUGGUUUCUAGGGACUAAUG   83

2.5 Sequence 1172 from Patent EP2074227 NA coding protein psRNATarget
JB163508.1
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  ||||||||||||||=||||||||*
targets:60   GUGUUUGGUUUCUAGGGACUAAUG   83

2.5 Sequence 1172 from Patent EP2559767 NA coding protein psRNATarget
XM_008647122.2
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  ||||||||||*|||=|||||||||
targets:2962   GUGUUUGGUUACUAGGGACUAAUU   2985

2.5 PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008647123.2
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  ||||||||||*|||=|||||||||
targets:2573   GUGUUUGGUUACUAGGGACUAAUU   2596

2.5 PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X2, mRNA NA coding protein psRNATarget
BT084832.2
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  ||||||||||*|||=|||||||||
targets:502   GUGUUUGGUUACUAGGGACUAAUU   525

2.5 Zea mays full-length cDNA clone ZM_BFb0189L01 mRNA, complete cds NA coding protein psRNATarget
BT053999.2
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  *|||||||||||||=||||||||*
targets:1934   AUGUUUGGUUUCUAGGGACUAAUA   1957

2.5 Zea mays full-length cDNA clone ZM_BFc0109O10 mRNA, complete cds NA coding protein psRNATarget
NM_001152323.1
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  *|||||||||||||=||||||||*
targets:1934   AUGUUUGGUUUCUAGGGACUAAUA   1957

2.5 Zea mays uncharacterized LOC100279302 (LOC100279302), mRNA NA coding protein psRNATarget
BT065747.2
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  *|||||||||||||=||||||||*
targets:764   AUGUUUGGUUUCUAGGGACUAAUA   787

2.5 Zea mays full-length cDNA clone ZM_BFc0062G24 mRNA, complete cds NA coding protein psRNATarget
JB163511.1
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  *|||||||||||||=||||||||*
targets:2   AUGUUUGGUUUCUAGGGACUAAUG   25

2.5 Sequence 1175 from Patent EP2559767 NA coding protein psRNATarget
LQ235180.1
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  *|||||||||||||=||||||||*
targets:2   AUGUUUGGUUUCUAGGGACUAAUG   25

2.5 Sequence 1175 from Patent EP2985353 NA coding protein psRNATarget
HI403050.1
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  *|||||||||||||=||||||||*
targets:2   AUGUUUGGUUUCUAGGGACUAAUG   25

2.5 Sequence 1175 from Patent EP2074227 NA coding protein psRNATarget
XM_008676145.2
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  ||||||||||||||*||||||||*
targets:830   GUGUUUGGUUUCUAUGGACUAAUG   853

2.5 PREDICTED: Zea mays 23 kDa jasmonate-induced protein-like (LOC103650571), mRNA NA coding protein psRNATarget
LQ235174.1
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  ||||||||||||||||*||||||*
targets:2   GUGUUUGGUUUCUAAGAACUAAUG   25

2.5 Sequence 1169 from Patent EP2985353 NA coding protein psRNATarget
HI403044.1
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  ||||||||||||||||*||||||*
targets:2   GUGUUUGGUUUCUAAGAACUAAUG   25

2.5 Sequence 1169 from Patent EP2074227 NA coding protein psRNATarget
JB163505.1
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  ||||||||||||||||*||||||*
targets:2   GUGUUUGGUUUCUAAGAACUAAUG   25

2.5 Sequence 1169 from Patent EP2559767 NA coding protein psRNATarget
BT055601.1
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  |||*||||||||||=||||||||*
targets:787   GUGCUUGGUUUCUAGGGACUAAUA   810

2.5 Zea mays full-length cDNA clone ZM_BFc0063A22 mRNA, complete cds NA coding protein psRNATarget
NM_001153051.1
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  |||*||||||||||=||||||||*
targets:787   GUGCUUGGUUUCUAGGGACUAAUA   810

2.5 Zea mays NAD(P)-binding Rossmann-fold superfamily protein (LOC100280114), mRNA NA coding protein psRNATarget
EU944198.1
ncRNA:24   CACAAACCAAAGAUUCCUGAUUAA   1
  *|||||||||||||||*||||||*
targets:427   CUGUUUGGUUUCUAAGAACUAAUC   450

2.5 Zea mays clone 207719 mRNA sequence NA coding protein psRNATarget
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