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BaseInfo

ncRNA ID novel_zma_miR8735
Species Zea mays
Class miRNA
Genome position Chr7:146513130-146513339 [-]
Reference genome RefGen_v4
Source SRR4237221;SRR4237223
Length 24
Mature sequence(if miRNA) 1 - AGCACCGUACCUCUUUGAGCACCA - 24
Stem-loop(if miRNA) --            A          A                    U     C  C            ACACCA         AC     A            GGG
  GUGCUCAAAGAG UACGGUGCUC UGUGCAUAUUUUAAAUCUGA GCAUC AU UUGUAUUUAACG      GCUAAUUUU  GAAGA CCUCUUCUACCU   G
  |||||||||||| |||||||||| |||||||||||||||||||| ||||| || ||||||||||||      |||||||||  ||||| ||||||||||||
  CACGAGUUUCUC AUGCCACGAG ACACGUAUAAAAUUUAGAUU UGUAG UA AGCAUAGAUUGU      UGGUUAAAA  CUUUU GGGGAAGGUGGA   A
AC            C          C                    U     A  A            -CAUCG         CA     -            AAG
Stem-loop sequence GUGCUCAAAGAGAUACGGUGCUCAUGUGCAUAUUUUAAAUCUGAUGCAUCCAUCUUGUAUUUAACGACACCAGCUAAUUUUACGAAGAACCUCUUCUACCUGGGGAGAAAGGUGGAAGGGGUUUUCACAAAAUUGGUGCUACUGUUAGAUACGAAAUAGAUGUUUUAGAUUUAAAAUAUGCACACGAGCACCGUACCUCUUUGAGCACCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008661793.2
ncRNA:24   ACCACGAGUUUCUCCAUGCCACGA   1
  ||||||||||||=|||||||||||
targets:882   UGGUGCUCAAAGGGGUACGGUGCU   905

1.5 PREDICTED: Zea mays uncharacterized LOC103639018 (LOC103639018), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008661794.2
ncRNA:24   ACCACGAGUUUCUCCAUGCCACGA   1
  ||||||||||||=|||||||||||
targets:891   UGGUGCUCAAAGGGGUACGGUGCU   914

1.5 PREDICTED: Zea mays uncharacterized LOC103639018 (LOC103639018), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008672312.2
ncRNA:24   ACCACGAGUUUCUCCAUGCCACGA   1
  ****||||=|||||||=|||||||
targets:92   ACUAGCUCGAAGAGGUGCGGUGCU   115

2.5 PREDICTED: Zea mays putative disease resistance RPP13-like protein 1 (LOC103647804), mRNA NA coding protein psRNATarget
EU943312.1
ncRNA:24   ACCACGAGUUUCUCCAUGCCACGA   1
  *|****|||=||||||||||||||
targets:513   GGAGAAUCAGAGAGGUACGGUGCU   536

2.0 Zea mays clone 1594514 mRNA sequence NA coding protein psRNATarget
XM_020548625.1
ncRNA:24   ACCACGAGUUUCUCCAUGCCACGA   1
  *|****|||=||||||||||||||
targets:944   GGAGAAUCAGAGAGGUACGGUGCU   967

2.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At1g63070, mitochondrial-like (LOC103647847), transcript variant X22, mRNA NA coding protein psRNATarget
XM_020548618.1
ncRNA:24   ACCACGAGUUUCUCCAUGCCACGA   1
  *|****|||=||||||||||||||
targets:944   GGAGAAUCAGAGAGGUACGGUGCU   967

2.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At1g63070, mitochondrial-like (LOC103647847), transcript variant X15, mRNA NA coding protein psRNATarget
XM_020548623.1
ncRNA:24   ACCACGAGUUUCUCCAUGCCACGA   1
  *|****|||=||||||||||||||
targets:944   GGAGAAUCAGAGAGGUACGGUGCU   967

2.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At1g63070, mitochondrial-like (LOC103647847), transcript variant X20, mRNA NA coding protein psRNATarget
XM_020548624.1
ncRNA:24   ACCACGAGUUUCUCCAUGCCACGA   1
  *|****|||=||||||||||||||
targets:944   GGAGAAUCAGAGAGGUACGGUGCU   967

2.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At1g63070, mitochondrial-like (LOC103647847), transcript variant X21, mRNA NA coding protein psRNATarget
XM_020548620.1
ncRNA:24   ACCACGAGUUUCUCCAUGCCACGA   1
  *|****|||=||||||||||||||
targets:944   GGAGAAUCAGAGAGGUACGGUGCU   967

2.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At1g63070, mitochondrial-like (LOC103647847), transcript variant X17, mRNA NA coding protein psRNATarget
XM_020548621.1
ncRNA:24   ACCACGAGUUUCUCCAUGCCACGA   1
  *|****|||=||||||||||||||
targets:944   GGAGAAUCAGAGAGGUACGGUGCU   967

2.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At1g63070, mitochondrial-like (LOC103647847), transcript variant X18, mRNA NA coding protein psRNATarget
XM_020548617.1
ncRNA:24   ACCACGAGUUUCUCCAUGCCACGA   1
  *|****|||=||||||||||||||
targets:944   GGAGAAUCAGAGAGGUACGGUGCU   967

2.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At1g63070, mitochondrial-like (LOC103647847), transcript variant X14, mRNA NA coding protein psRNATarget
XM_020548616.1
ncRNA:24   ACCACGAGUUUCUCCAUGCCACGA   1
  *|****|||=||||||||||||||
targets:944   GGAGAAUCAGAGAGGUACGGUGCU   967

2.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At1g63070, mitochondrial-like (LOC103647847), transcript variant X13, mRNA NA coding protein psRNATarget
XM_020548606.1
ncRNA:24   ACCACGAGUUUCUCCAUGCCACGA   1
  *|****|||=||||||||||||||
targets:944   GGAGAAUCAGAGAGGUACGGUGCU   967

2.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At1g63070, mitochondrial-like (LOC103647847), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020548614.1
ncRNA:24   ACCACGAGUUUCUCCAUGCCACGA   1
  *|****|||=||||||||||||||
targets:944   GGAGAAUCAGAGAGGUACGGUGCU   967

2.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At1g63070, mitochondrial-like (LOC103647847), transcript variant X11, mRNA NA coding protein psRNATarget
XM_020548611.1
ncRNA:24   ACCACGAGUUUCUCCAUGCCACGA   1
  *|****|||=||||||||||||||
targets:944   GGAGAAUCAGAGAGGUACGGUGCU   967

2.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At1g63070, mitochondrial-like (LOC103647847), transcript variant X8, mRNA NA coding protein psRNATarget
XM_020548607.1
ncRNA:24   ACCACGAGUUUCUCCAUGCCACGA   1
  *|****|||=||||||||||||||
targets:944   GGAGAAUCAGAGAGGUACGGUGCU   967

2.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At1g63070, mitochondrial-like (LOC103647847), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020548608.1
ncRNA:24   ACCACGAGUUUCUCCAUGCCACGA   1
  *|****|||=||||||||||||||
targets:944   GGAGAAUCAGAGAGGUACGGUGCU   967

2.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At1g63070, mitochondrial-like (LOC103647847), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020548610.1
ncRNA:24   ACCACGAGUUUCUCCAUGCCACGA   1
  *|****|||=||||||||||||||
targets:655   GGAGAAUCAGAGAGGUACGGUGCU   678

2.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At1g63070, mitochondrial-like (LOC103647847), transcript variant X7, mRNA NA coding protein psRNATarget
XM_020548619.1
ncRNA:24   ACCACGAGUUUCUCCAUGCCACGA   1
  *|****|||=||||||||||||||
targets:944   GGAGAAUCAGAGAGGUACGGUGCU   967

2.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At1g63070, mitochondrial-like (LOC103647847), transcript variant X16, mRNA NA coding protein psRNATarget
XM_020548622.1
ncRNA:24   ACCACGAGUUUCUCCAUGCCACGA   1
  *|****|||=||||||||||||||
targets:944   GGAGAAUCAGAGAGGUACGGUGCU   967

2.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At1g63070, mitochondrial-like (LOC103647847), transcript variant X19, mRNA NA coding protein psRNATarget
XM_020548612.1
ncRNA:24   ACCACGAGUUUCUCCAUGCCACGA   1
  *|****|||=||||||||||||||
targets:944   GGAGAAUCAGAGAGGUACGGUGCU   967

2.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At1g63070, mitochondrial-like (LOC103647847), transcript variant X9, mRNA NA coding protein psRNATarget
XM_020548609.1
ncRNA:24   ACCACGAGUUUCUCCAUGCCACGA   1
  *|****|||=||||||||||||||
targets:944   GGAGAAUCAGAGAGGUACGGUGCU   967

2.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At1g63070, mitochondrial-like (LOC103647847), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020548615.1
ncRNA:24   ACCACGAGUUUCUCCAUGCCACGA   1
  *|****|||=||||||||||||||
targets:944   GGAGAAUCAGAGAGGUACGGUGCU   967

2.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At1g63070, mitochondrial-like (LOC103647847), transcript variant X12, mRNA NA coding protein psRNATarget
XM_020548605.1
ncRNA:24   ACCACGAGUUUCUCCAUGCCACGA   1
  *|****|||=||||||||||||||
targets:944   GGAGAAUCAGAGAGGUACGGUGCU   967

2.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At1g63070, mitochondrial-like (LOC103647847), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020548613.1
ncRNA:24   ACCACGAGUUUCUCCAUGCCACGA   1
  *|****|||=||||||||||||||
targets:944   GGAGAAUCAGAGAGGUACGGUGCU   967

2.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At1g63070, mitochondrial-like (LOC103647847), transcript variant X10, mRNA NA coding protein psRNATarget
XM_020548604.1
ncRNA:24   ACCACGAGUUUCUCCAUGCCACGA   1
  *|****|||=||||||||||||||
targets:944   GGAGAAUCAGAGAGGUACGGUGCU   967

2.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At1g63070, mitochondrial-like (LOC103647847), transcript variant X1, mRNA NA coding protein psRNATarget
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