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BaseInfo

ncRNA ID	novel_zma_miR8730
Species	Zea mays
Class	miRNA
Genome position	Chr7:179253033-179253095 [+]
Reference genome	RefGen_v4
Source	SRR4237221
Length	24
Mature sequence(if miRNA)	1 - GUCAUAGAUCUUGGCGCCGACCCC - 24
Stem-loop(if miRNA)	--                         U GCC   GUCAUAGAUCUUGGCGCCGACCCCC C   A   ||||||||||||||||||||||||| |   CGGUAUCUAGAACCGCGGCUGGGGG G   U CG                         - AAC
Stem-loop sequence	GUCAUAGAUCUUGGCGCCGACCCCCUCGCCAUCAAGGGGGGUCGGCGCCAAGAUCUAUGGCGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020544775.1	ncRNA:24   CCCCAGCCGCGGUUCUAGAUACUG   1   ||||||||||=|||||||||||=| targets:142   GGGGUCGGCGUCAAGAUCUAUGGC   165 Target Full Sequence	2.5	PREDICTED: Zea mays vegetative cell wall protein gp1-like (LOC109942650), mRNA	NA	coding protein	psRNATarget
XM_020538176.1	ncRNA:24   CCCCAGCCGCGGUUCUAGAUACUG   1   ||||||||||||||||||||||== targets:349   GGGGUCGGCGCCAAGAUCUAUGGU   372 Target Full Sequence	2.5	PREDICTED: Zea mays pollen-specific leucine-rich repeat extensin-like protein 1 (LOC109939828), mRNA	NA	coding protein	psRNATarget
EU959730.1	ncRNA:24   CCC-CAGCCGCGGUUCUAGAUACUG   1   |||-||||||||||||||||||||= targets:1516   GGGUGUCGGCGCCAAGAUCUAUGAU   1540 Target Full Sequence	1.0	Zea mays clone 219696 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149941.1	ncRNA:24   CCC-CAGCCGCGGUUCUAGAUACUG   1   |||-||||||||||||||||||||= targets:1516   GGGUGUCGGCGCCAAGAUCUAUGAU   1540 Target Full Sequence	1.0	Zea mays Core-2/I-branching beta-16-N-acetylglucosaminyltransferase family protein (LOC100276060), mRNA	NA	coding protein	psRNATarget
HI405982.1	ncRNA:24   CC--CCAGCCGCGGUUCUAGAUACUG   1   ||--|*||||||||||||||||||=| targets:143   GGUAGCUCGGCGCCAAGAUCUAUGGC   168 Target Full Sequence	1.5	Sequence 4107 from Patent EP2074227	NA	coding protein	psRNATarget
JB166443.1	ncRNA:24   CC--CCAGCCGCGGUUCUAGAUACUG   1   ||--|*||||||||||||||||||=| targets:143   GGUAGCUCGGCGCCAAGAUCUAUGGC   168 Target Full Sequence	1.5	Sequence 4107 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238112.1	ncRNA:24   CC--CCAGCCGCGGUUCUAGAUACUG   1   ||--|*||||||||||||||||||=| targets:143   GGUAGCUCGGCGCCAAGAUCUAUGGC   168 Target Full Sequence	1.5	Sequence 4107 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020547329.1	ncRNA:24   CCCCAGCCGCGGUUCUAGAUACUG   1   |*|*||||||||||||||||||=| targets:1837   GAGCUCGGCGCCAAGAUCUAUGGC   1860 Target Full Sequence	1.5	PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020547327.1	ncRNA:24   CCCCAGCCGCGGUUCUAGAUACUG   1   |*|*||||||||||||||||||=| targets:1862   GAGCUCGGCGCCAAGAUCUAUGGC   1885 Target Full Sequence	1.5	PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008668082.2	ncRNA:24   CCCCAGCCGCGGUUCUAGAUACUG   1   |*|*||||||||||||||||||=| targets:1869   GAGCUCGGCGCCAAGAUCUAUGGC   1892 Target Full Sequence	1.5	PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008664820.2	ncRNA:24   CCCCAGCCGCGGUUCUAGAUACUG   1   ****||||||||||||||||||=| targets:13   UACCUCGGCGCCAAGAUCUAUGGC   36 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103641469 (LOC103641469), mRNA	NA	coding protein	psRNATarget
XM_020544295.1	ncRNA:24   CCCCAGCCGCGGUUCUAGAUACUG   1   ****||||||||||||||||||=| targets:58   UACCUCGGCGCCAAGAUCUAUGGC   81 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103644543 (LOC103644543), mRNA	NA	coding protein	psRNATarget
XM_020548134.1	ncRNA:24   CCCCAGCCGCGGUUCUAGAUACUG   1   ****||||||||||||||||||=| targets:35   UACCUCGGCGCCAAGAUCUAUGGC   58 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109943956 (LOC109943956), mRNA	NA	coding protein	psRNATarget
XM_008666282.2	ncRNA:24   CCCCAGCCGCGGUUCUAGAUACUG   1   ****||||||||||||||||||=| targets:215   UACCUCGGCGCCAAGAUCUAUGGC   238 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103643129 (LOC103643129), mRNA	NA	coding protein	psRNATarget
XM_020545943.1	ncRNA:24   CCCCAGCCGCGGUUCUAGAUACUG   1   ****||||||||||||||||||=| targets:215   UACCUCGGCGCCAAGAUCUAUGGC   238 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109943115 (LOC109943115), mRNA	NA	coding protein	psRNATarget
XM_020545942.1	ncRNA:24   CCCCAGCCGCGGUUCUAGAUACUG   1   ****||||||||||||||||||=| targets:215   UACCUCGGCGCCAAGAUCUAUGGC   238 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109943114 (LOC109943114), mRNA	NA	coding protein	psRNATarget
XM_008652363.2	ncRNA:24   CCCCAGCCGCGGUUCUAGAUACUG   1   ****||||||||||||||||||=| targets:219   UACCUCGGCGCCAAGAUCUAUGGC   242 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103631452 (LOC103631452), mRNA	NA	coding protein	psRNATarget
XM_020541347.1	ncRNA:24   CCCCAGCCGCGGUUCUAGAUACUG   1   ****||||||||||||||||||=| targets:219   UACCUCGGCGCCAAGAUCUAUGGC   242 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109940949 (LOC109940949), mRNA	NA	coding protein	psRNATarget
XM_020537732.1	ncRNA:24   CCCCAGCCGCGGUUCUAGAUACUG   1   ****||||||||||||||||||=| targets:284   UACCUCGGCGCCAAGAUCUAUGGC   307 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109939552 (LOC109939552), mRNA	NA	coding protein	psRNATarget
XM_008654703.2	ncRNA:24   CCCCAGCCGCGGUUCUAGAUACUG   1   ****||||||||||||||||||=| targets:991   UACCUCGGCGCCAAGAUCUAUGGC   1014 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103633011 (LOC103633011), mRNA	NA	coding protein	psRNATarget
JB170356.1	ncRNA:24   CCCCAGCCGCGGUUCUAGAUACUG   1   |**|*|*|||||||||||||||=| targets:48   GAUGCCAGCGCCAAGAUCUAUGGC   71 Target Full Sequence	2.5	Sequence 8020 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242025.1	ncRNA:24   CCCCAGCCGCGGUUCUAGAUACUG   1   |**|*|*|||||||||||||||=| targets:48   GAUGCCAGCGCCAAGAUCUAUGGC   71 Target Full Sequence	2.5	Sequence 8020 from Patent EP2985353	NA	coding protein	psRNATarget
HI409895.1	ncRNA:24   CCCCAGCCGCGGUUCUAGAUACUG   1   |**|*|*|||||||||||||||=| targets:48   GAUGCCAGCGCCAAGAUCUAUGGC   71 Target Full Sequence	2.5	Sequence 8020 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020552215.1	ncRNA:24   CCCCAGCCGCGGUUCUAGAUACUG   1   ****|||*||||||||||||||=| targets:4   UACCUCGACGCCAAGAUCUAUGGC   27 Target Full Sequence	2.5	PREDICTED: Zea mays skin secretory protein xP2-like (LOC109945850), mRNA	NA	coding protein	psRNATarget
XM_020542283.1	ncRNA:24   CCCCAGCCGCGGUUCUAGAUACUG   1   *|**||||||*||||||||||||* targets:1903   AGAAUCGGCGACAAGAUCUAUGAA   1926 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100501334 (LOC100501334), transcript variant X1, mRNA	NA	coding protein	psRNATarget