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BaseInfo

ncRNA ID ath-miRf10095-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 24
Mature sequence(if miRNA) NA - UACUCGACCAGGGGGUCGAGUGGU - NA
Stem-loop(if miRNA)    -   -          AA   A    GG G      AGUAGUGGUCUGGUAAUGGAGGUGAAGAUACUCGACCUCGGGGUCGAGUGAU
GGU GAU ACUCGACUUC  GGU GAGU  U AGAUCG                                                    G
||| ||| ||||||||||  ||| ||||  | ||||||                                                    U
UCG CUG UGAGCUGGGG  CCA CUCA  C UUCUGU                                                    G
   U   G          GA   G    -U -      GAGCUGGAGCGCCAGCUCACAGAAGUAAGGGUAGUGGACUGGUAGUGAGCUA
Stem-loop sequence GGUGAUACUCGACUUCAAGGUAGAGUGGUGAGAUCGAGUAGUGGUCUGGUAAUGGAGGUGAAGAUACUCGACCUCGGGGUCGAGUGAUGUGAUCGAGUGAUGGUCAGGUGAUGGGAAUGAAGACACUCGACCGCGAGGUCGAGUGUCUUCUACUCGACCAGGGGGUCGAGUGGUCUGCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
DQ069808.1
ncRNA:24   UGGUGAGCUGGGGGACCAGCUCAU   1
  ||||||||||||||||||||||||
targets:89   ACCACUCGACCCCCUGGUCGAGUA   112

0.0 Arabidopsis thaliana At2g10880 mRNA, partial sequence NA coding protein psRNATarget
EF183192.1
ncRNA:24   UGGUGAGCUGGGGGACCAGCUCAU   1
  ||||||||||||||||||||||||
targets:123   ACCACUCGACCCCCUGGUCGAGUA   146

0.0 Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence NA coding protein psRNATarget
EF183193.1
ncRNA:24   UGGUGAGCUGGGGGACCAGCUCAU   1
  ||||||||||||||||||||||||
targets:498   ACCACUCGACCCCCUGGUCGAGUA   521

0.0 Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence NA coding protein psRNATarget
EF183191.1
ncRNA:24   UGGUGAGCUGGGGGACCAGCUCAU   1
  ||||||||||||||||||||||||
targets:498   ACCACUCGACCCCCUGGUCGAGUA   521

0.0 Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence NA coding protein psRNATarget
BT014714.1
ncRNA:24   UGGUGAGCUGGGGGACCAGCUCAU   1
  =|||||||||||||||||||||||
targets:229   GCCACUCGACCCCCUGGUCGAGUA   252

0.0 Arabidopsis thaliana At4g05636.1 mRNA sequence NA coding protein psRNATarget
BT014714.1
ncRNA:24   UGGUGAGCUGGGGGACCAGCUCAU   1
  *|=|||||||||||||||||||||
targets:180   UCUACUCGACCCCCUGGUCGAGUA   203

0.0 Arabidopsis thaliana At4g05636.1 mRNA sequence NA coding protein psRNATarget
BT015478.1
ncRNA:24   UGGUGAGCUGGGGGACCAGCUCAU   1
  =|||||||||||||||||||||||
targets:229   GCCACUCGACCCCCUGGUCGAGUA   252

0.0 Arabidopsis thaliana At4g05636 mRNA sequence NA coding protein psRNATarget
BT015478.1
ncRNA:24   UGGUGAGCUGGGGGACCAGCUCAU   1
  *|=|||||||||||||||||||||
targets:180   UCUACUCGACCCCCUGGUCGAGUA   203

0.0 Arabidopsis thaliana At4g05636 mRNA sequence NA coding protein psRNATarget
EF183042.1
ncRNA:24   UGGUGAGCUGGGGGACCAGCUCAU   1
  |=||||||||||||||||||||||
targets:1570   AUCACUCGACCCCCUGGUCGAGUA   1593

0.0 Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence NA coding protein psRNATarget
BT025674.1
ncRNA:24   UGG--UGAGCUGGGGGACCAGCUCAU   1
  |||--|||||||||||||||||||||
targets:305   ACCUUACUCGACCCCCUGGUCGAGUA   330

0.0 Arabidopsis thaliana NA coding protein psRNATarget
BT014714.1
ncRNA:24   UGGUGAGCUGGGGGACCAGCUCAU   1
  ===||||*||||||||||||||||
targets:300   GUUACUCAACCCCCUGGUCGAGUA   323

1.0 Arabidopsis thaliana At4g05636.1 mRNA sequence NA coding protein psRNATarget
BT015478.1
ncRNA:24   UGGUGAGCUGGGGGACCAGCUCAU   1
  ===||||*||||||||||||||||
targets:300   GUUACUCAACCCCCUGGUCGAGUA   323

1.0 Arabidopsis thaliana At4g05636 mRNA sequence NA coding protein psRNATarget
AY231407.1
ncRNA:24   UGGUGAGCUGGGGGACCAGCUCAU   1
  |==||*||||||||||||||||||
targets:582   AUUACYCGACCCCCUGGUCGAGUA   605

1.0 Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds NA coding protein psRNATarget
BT025674.1
ncRNA:24   UGGUGAGCUGGGGGACCAGCUCAU   1
  *|=|||||||||||*|||||||||
targets:186   UCUACUCGACCCCCAGGUCGAGUA   209

1.5 Arabidopsis thaliana NA coding protein psRNATarget
AY231407.1
ncRNA:24   UGGUGAGCUGGGGGACCAGCUCAU   1
  |||||||||||||*||||||||||
targets:488   ACCACUCGACCCCGUGGUCGAGUA   511

1.5 Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds NA coding protein psRNATarget
AY231407.1
ncRNA:24   UGGUGAGCUGGGGGACCAGCUCAU   1
  |||||||||||||*||||||||||
targets:534   ACCACUCGACCCCAUGGUCGAGUA   557

1.5 Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds NA coding protein psRNATarget
NM_103391.1
ncRNA:24   UGGUGAGCUGGGGGACCAGCUCAU   1
  ||||||||||||||*|||||||||
targets:1103   ACCACUCGACCCCCAGGUCGAGUA   1126

1.5 Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA DNAse I-like superfamily protein(AT1G40390) coding protein psRNATarget
EF183192.1
ncRNA:24   UGGUGAGCUGGGGGACCAGCUCAU   1
  ||||*||*|||||*||||||||||
targets:168   ACCAGUCAACCCCGUGGUCGAGUA   191

2.5 Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence NA coding protein psRNATarget
EF183193.1
ncRNA:24   UGGUGAGCUGGGGGACCAGCUCAU   1
  ||||*||*|||||*||||||||||
targets:543   ACCAGUCAACCCCGUGGUCGAGUA   566

2.5 Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence NA coding protein psRNATarget
EF183191.1
ncRNA:24   UGGUGAGCUGGGGGACCAGCUCAU   1
  ||||*||*|||||*||||||||||
targets:543   ACCAGUCAACCCCGUGGUCGAGUA   566

2.5 Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence NA coding protein psRNATarget
BT014714.1
ncRNA:24   UGGU--GAGCUGGGGGACCAGCUCAU   1
  ||||--||||||||||*||||||||=
targets:133   ACCAUACUCGACCCCCAGGUCGAGUG   158

2.5 Arabidopsis thaliana At4g05636.1 mRNA sequence NA coding protein psRNATarget
BT015478.1
ncRNA:24   UGGU--GAGCUGGGGGACCAGCUCAU   1
  ||||--||||||||||*||||||||=
targets:133   ACCAUACUCGACCCCCAGGUCGAGUG   158

2.5 Arabidopsis thaliana At4g05636 mRNA sequence NA coding protein psRNATarget
NM_103391.1
ncRNA:24   UGGUGAGCUGGGGGACCAGCUCAU   1
  |||||||||||||*|||||||||=
targets:1208   ACCACUCGACCCCGUGGUCGAGUG   1231

2.5 Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA DNAse I-like superfamily protein(AT1G40390) coding protein psRNATarget
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