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BaseInfo

ncRNA ID ath-miR864-5p
Species Arabidopsis thaliana
Class miRNA
Genome position chr1:6740500-6740591 [+]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 4 - UCAGGUAUGAUUGACUUCAAA - 24
Stem-loop(if miRNA)       -     G        C     ----AUACCUU      AUA
GCUUCA GGUAU AUUGACUU AAAAA           GAAACU   A
|||||| ||||| |||||||| |||||           ||||||   A
CGAAGU CCAUA UAACUGAA UUUUU           CUUUGA   C
      U     A        A     AGUUUAAGUUU      CUC
Stem-loop sequence GCUUCAGGUAUGAUUGACUUCAAAAAAUACCUUGAAACUAUAAACCUCAGUUUCUUUGAAUUUGAUUUUUAAAGUCAAUAAUACCUUGAAGC

Reference

1 PMID:17299599
"High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes";
Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC;
PLoS One. 2:e219(2007).