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BaseInfo

ncRNA ID novel_zma_miR8719
Species Zea mays
Class miRNA
Genome position Chr6:96820774-96820988 [+]
Reference genome RefGen_v4
Source SRR4237221;SRR5105959
Length 24
Mature sequence(if miRNA) 1 - UUACGAAGAACCCCUCCCACCAGG - 24
Stem-loop(if miRNA) --                                                                      --AU   -AAA   A   AC    UUUAAAAU    AC
  UUACGAAGAACCCCUCCCACCAGGGGAGGAAGGUGGAAGGGGUGCUUCACAAAAUUGGUACUGUUGUUAG    GCG    UGG UGC  CAGA        GUGC  A
  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||    ||| |||  ||||        ||||
  AAUGCUUCUUGGGGAGGGUGGUCCCCUCCUUCCACCUUCCCCACGAAGUGUUUUAACCAUGACAACAAUC    UGC    AUC ACG  GUUU        CACG  U
AA                                                                      CCCU   AUAG   -   -A    CCCCAUGC    AG
Stem-loop sequence UUACGAAGAACCCCUCCCACCAGGGGAGGAAGGUGGAAGGGGUGCUUCACAAAAUUGGUACUGUUGUUAGAUGCGAAAUGGAUGCACCAGAUUUAAAAUGUGCACAUGAGCACCGUACCCCUUUGAGCACUAGAUACGUUCCCCUAACAACAGUACCAAUUUUGUGAAGCACCCCUUCCACCUUCCUCCCCUGGUGGGAGGGGUUCUUCGUAAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT064809.1
ncRNA:24   GG-ACCACCCUCCCCAAGAAGCAUU   1
  ||-|||*|||||||||||||=||||
targets:1007   CCAUGGAGGGAGGGGUUCUUUGUAA   1031

2.5 Zea mays full-length cDNA clone ZM_BFb0167E07 mRNA, complete cds NA coding protein psRNATarget
XM_020538815.1
ncRNA:24   GG-ACCACCCUCCCCAAGAAGCAUU   1
  ||-|||*|||||||||||||=||||
targets:1037   CCAUGGAGGGAGGGGUUCUUUGUAA   1061

2.5 PREDICTED: Zea mays Ribosome-recycling factor chloroplastic (LOC100217177), transcript variant X1, mRNA NA coding protein psRNATarget