ncRNA ID | novel_zma_miR8719 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr6:96820774-96820988 [+] |
Reference genome | RefGen_v4 |
Source | SRR4237221;SRR5105959 |
Length | 24 |
Mature sequence(if miRNA) | 1 - UUACGAAGAACCCCUCCCACCAGG - 24 |
Stem-loop(if miRNA) |
--                                                                      --AU   -AAA   A   AC    UUUAAAAU    AC   UUACGAAGAACCCCUCCCACCAGGGGAGGAAGGUGGAAGGGGUGCUUCACAAAAUUGGUACUGUUGUUAG    GCG    UGG UGC  CAGA        GUGC  A   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||    ||| |||  ||||        ||||   AAUGCUUCUUGGGGAGGGUGGUCCCCUCCUUCCACCUUCCCCACGAAGUGUUUUAACCAUGACAACAAUC    UGC    AUC ACG  GUUU        CACG  U AA                                                                      CCCU   AUAG   -   -A    CCCCAUGC    AG |
Stem-loop sequence | UUACGAAGAACCCCUCCCACCAGGGGAGGAAGGUGGAAGGGGUGCUUCACAAAAUUGGUACUGUUGUUAGAUGCGAAAUGGAUGCACCAGAUUUAAAAUGUGCACAUGAGCACCGUACCCCUUUGAGCACUAGAUACGUUCCCCUAACAACAGUACCAAUUUUGUGAAGCACCCCUUCCACCUUCCUCCCCUGGUGGGAGGGGUUCUUCGUAAAA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
BT064809.1 |
|
2.5 | Zea mays full-length cDNA clone ZM_BFb0167E07 mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
XM_020538815.1 |
|
2.5 | PREDICTED: Zea mays Ribosome-recycling factor chloroplastic (LOC100217177), transcript variant X1, mRNA | NA | coding protein | psRNATarget |