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BaseInfo

ncRNA ID novel_zma_miR8712
Species Zea mays
Class miRNA
Genome position Chr6:94230940-94231101 [-]
Reference genome RefGen_v4
Source SRR4237221
Length 24
Mature sequence(if miRNA) 1 - AUAGUCUCUAGAAACCAAACACCC - 24
Stem-loop(if miRNA) --            AC  -    A       ----------CCU          -     U   U     AAUAUAA          
  GUGUUUGGUUUU  GA ACUA UUUUUAG             UUCUGUUUUA UUUCU AAA UACUA       AAACUAAAAUA
  ||||||||||||  || |||| |||||||             |||||||||| ||||| ||| |||||       ||||||||||G
  CACAAACCAAAG  CU UGAU AAAAAUC             AAGAUAAAAU AGAGA UUU AUGAU       UUUGAUUUUGA
CC            AU  C    A       AAUGAAUUAAAAU          C     -   U     GUACACA          
Stem-loop sequence GUGUUUGGUUUUACGAACUAAUUUUUAGCCUUUCUGUUUUAUUUCUUAAAUUACUAAAUAUAAAAACUAAAAUAGAGUUUUAGUUUACACAUGUAGUAUUUUAGAGACUAAAAUAGAAUAAAAUUAAGUAACUAAAAAAUAGUCUCUAGAAACCAAACACCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU956677.1
ncRNA:24   CCCACAAACCAAAGAUCUCUGAUA   1
  |||||||||||||||||||||||*
targets:2010   GGGUGUUUGGUUUCUAGAGACUAA   2033

1.0 Zea mays clone 1570443 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
JB163508.1
ncRNA:24   CCCACAAACCAAAGAUCUCUGAUA   1
  |||||||||||||||||=|||||*
targets:58   GGGUGUUUGGUUUCUAGGGACUAA   81

2.5 Sequence 1172 from Patent EP2559767 NA coding protein psRNATarget
LQ235177.1
ncRNA:24   CCCACAAACCAAAGAUCUCUGAUA   1
  |||||||||||||||||=|||||*
targets:58   GGGUGUUUGGUUUCUAGGGACUAA   81

2.5 Sequence 1172 from Patent EP2985353 NA coding protein psRNATarget
HI403047.1
ncRNA:24   CCCACAAACCAAAGAUCUCUGAUA   1
  |||||||||||||||||=|||||*
targets:58   GGGUGUUUGGUUUCUAGGGACUAA   81

2.5 Sequence 1172 from Patent EP2074227 NA coding protein psRNATarget
LQ235170.1
ncRNA:24   CCCACAAACCAAAGAUCUCUGAUA   1
  |||||||||||||||||=|||||*
targets:2   GGGUGUUUGGUUUCUAGGGACUAA   25

2.5 Sequence 1165 from Patent EP2985353 NA coding protein psRNATarget
JB163501.1
ncRNA:24   CCCACAAACCAAAGAUCUCUGAUA   1
  |||||||||||||||||=|||||*
targets:2   GGGUGUUUGGUUUCUAGGGACUAA   25

2.5 Sequence 1165 from Patent EP2559767 NA coding protein psRNATarget
HI403040.1
ncRNA:24   CCCACAAACCAAAGAUCUCUGAUA   1
  |||||||||||||||||=|||||*
targets:2   GGGUGUUUGGUUUCUAGGGACUAA   25

2.5 Sequence 1165 from Patent EP2074227 NA coding protein psRNATarget
EU942443.1
ncRNA:24   CCCACAAACCAAAGAUCUCUGAUA   1
  |||||||||||||||||=|||||*
targets:463   GGGUGUUUGGUUUCUAGGGACUAA   486

2.5 Zea mays clone 1501876 mRNA sequence NA coding protein psRNATarget
EZ052166.1
ncRNA:24   CCCACAAACCAAAGAUCUCUGAUA   1
  |||||||||||||||||=|||||*
targets:750   GGGUGUUUGGUUUCUAGGGACUAA   773

2.5 TSA: Zea mays contig53286, mRNA sequence NA coding protein psRNATarget
XM_020553397.1
ncRNA:24   CCCACAAACCAAAGAUCUCUGAUA   1
  |||||||||||||||||=|||||*
targets:550   GGGUGUUUGGUUUCUAGGGACUAA   573

2.5 PREDICTED: Zea mays SANT/MYB protein (LOC100284980), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001139183.1
ncRNA:24   CCCACAAACCAAAGAUCUCUGAUA   1
  |||||||||||||||||=|||||*
targets:813   GGGUGUUUGGUUUCUAGGGACUAA   836

2.5 Zea mays hypothetical protein (LOC100194130), mRNA NA coding protein psRNATarget
BT036582.1
ncRNA:24   CCCACAAACCAAAGAUCUCUGAUA   1
  |||||||||||||||||=|||||*
targets:813   GGGUGUUUGGUUUCUAGGGACUAA   836

2.5 Zea mays full-length cDNA clone ZM_BFb0124H18 mRNA, complete cds NA coding protein psRNATarget
NM_001313850.1
ncRNA:24   CCCACAAACCAAAGAUCUCUGAUA   1
  |||||||||||||||||=|||||*
targets:1137   GGGUGUUUGGUUUCUAGGGACUAA   1160

2.5 Zea mays voltage-gated potassium channel beta subunit (LOC100282429), mRNA NA coding protein psRNATarget
BT088358.1
ncRNA:24   CCCACAAACCAAAGAUCUCUGAUA   1
  |||||||||||||||||=|||||*
targets:1137   GGGUGUUUGGUUUCUAGGGACUAA   1160

2.5 Zea mays full-length cDNA clone ZM_BFc0155C19 mRNA, complete cds NA coding protein psRNATarget
XM_008650759.2
ncRNA:24   CCCACAAACCAAAGAUCUCUGAUA   1
  |||||||||||||||||=|||||*
targets:1135   GGGUGUUUGGUUUCUAGGGACUAA   1158

2.5 PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008650758.2
ncRNA:24   CCCACAAACCAAAGAUCUCUGAUA   1
  |||||||||||||||||=|||||*
targets:1144   GGGUGUUUGGUUUCUAGGGACUAA   1167

2.5 PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008650753.2
ncRNA:24   CCCACAAACCAAAGAUCUCUGAUA   1
  |||||||||||||||||=|||||*
targets:1147   GGGUGUUUGGUUUCUAGGGACUAA   1170

2.5 PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008650754.2
ncRNA:24   CCCACAAACCAAAGAUCUCUGAUA   1
  |||||||||||||||||=|||||*
targets:1153   GGGUGUUUGGUUUCUAGGGACUAA   1176

2.5 PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008667360.2
ncRNA:24   CCCACAAACCAAAGAUCUCUGAUA   1
  |||||||||||||||||=|||||*
targets:1144   GGGUGUUUGGUUUCUAGGGACUAA   1167

2.5 PREDICTED: Zea mays GNAT transcription factor (LOC103644167), mRNA NA coding protein psRNATarget
XM_020543841.1
ncRNA:24   CCCACAAACCAAAGAUCUCUGAUA   1
  |||||||||||||||||=|||||*
targets:918   GGGUGUUUGGUUUCUAGGGACUAA   941

2.5 PREDICTED: Zea mays lo1 pI allergen homolog 1 (lop1), transcript variant X1, mRNA NA coding protein psRNATarget
EU956227.1
ncRNA:24   CCCACAAACCAAAGAUCUCUGAUA   1
  |||||||||||||||||=|||||*
targets:1240   GGGUGUUUGGUUUCUAGGGACUAA   1263

2.5 Zea mays clone 1559264 mRNA sequence NA coding protein psRNATarget
BT085047.1
ncRNA:24   CCCACAAACCAAAGAUCUCUGAUA   1
  |||||||||||||||||=|||||*
targets:1191   GGGUGUUUGGUUUCUAGGGACUAA   1214

2.5 Zea mays full-length cDNA clone ZM_BFb0232J05 mRNA, complete cds NA coding protein psRNATarget
XM_020547858.1
ncRNA:24   CCCACAAACCAAAGAUCUCUGAUA   1
  |||||||||||||||||=|||||*
targets:1539   GGGUGUUUGGUUUCUAGGGACUAA   1562

2.5 PREDICTED: Zea mays uncharacterized LOC100382535 (LOC100382535), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020542419.1
ncRNA:24   CCCACAAACCAAAGAUCUCUGAUA   1
  |||||||||||||||||=|||||*
targets:2142   GGGUGUUUGGUUUCUAGGGACUAA   2165

2.5 PREDICTED: Zea mays ADP,ATP carrier protein 2, chloroplastic (LOC103637385), mRNA NA coding protein psRNATarget
XM_020550311.1
ncRNA:24   CCCACAAACCAAAGAUCUCUGAUA   1
  |||||||||||||||||=|||||*
targets:2445   GGGUGUUUGGUUUCUAGGGACUAA   2468

2.5 PREDICTED: Zea mays zinc finger CCCH domain-containing protein 67-like (LOC103650585), mRNA NA coding protein psRNATarget
XM_020545045.1
ncRNA:24   CCCACAAACCAAAGAUCUCUGAUA   1
  |||||||||||||||||=|||||*
targets:1920   GGGUGUUUGGUUUCUAGGGACUAA   1943

2.5 PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA NA coding protein psRNATarget
JB163502.1
ncRNA:23   CCACAAACCAAAGAUCUCUGAUA   1
  ||||||||||||||||=|||||*
targets:1   GGUGUUUGGUUUCUAGGGACUAA   23

2.5 Sequence 1166 from Patent EP2559767 NA coding protein psRNATarget
HI403055.1
ncRNA:23   CCACAAACCAAAGAUCUCUGAUA   1
  ||||||||||||||||=|||||*
targets:1   GGUGUUUGGUUUCUAGGGACUAA   23

2.5 Sequence 1180 from Patent EP2074227 NA coding protein psRNATarget
JB163513.1
ncRNA:23   CCACAAACCAAAGAUCUCUGAUA   1
  ||||||||||||||||=|||||*
targets:1   GGUGUUUGGUUUCUAGGGACUAA   23

2.5 Sequence 1177 from Patent EP2559767 NA coding protein psRNATarget
HI403052.1
ncRNA:23   CCACAAACCAAAGAUCUCUGAUA   1
  ||||||||||||||||=|||||*
targets:1   GGUGUUUGGUUUCUAGGGACUAA   23

2.5 Sequence 1177 from Patent EP2074227 NA coding protein psRNATarget
HI403041.1
ncRNA:23   CCACAAACCAAAGAUCUCUGAUA   1
  ||||||||||||||||=|||||*
targets:1   GGUGUUUGGUUUCUAGGGACUAA   23

2.5 Sequence 1166 from Patent EP2074227 NA coding protein psRNATarget
LQ235182.1
ncRNA:23   CCACAAACCAAAGAUCUCUGAUA   1
  ||||||||||||||||=|||||*
targets:1   GGUGUUUGGUUUCUAGGGACUAA   23

2.5 Sequence 1177 from Patent EP2985353 NA coding protein psRNATarget
LQ235185.1
ncRNA:23   CCACAAACCAAAGAUCUCUGAUA   1
  ||||||||||||||||=|||||*
targets:1   GGUGUUUGGUUUCUAGGGACUAA   23

2.5 Sequence 1180 from Patent EP2985353 NA coding protein psRNATarget
JB163516.1
ncRNA:23   CCACAAACCAAAGAUCUCUGAUA   1
  ||||||||||||||||=|||||*
targets:1   GGUGUUUGGUUUCUAGGGACUAA   23

2.5 Sequence 1180 from Patent EP2559767 NA coding protein psRNATarget
LQ235171.1
ncRNA:23   CCACAAACCAAAGAUCUCUGAUA   1
  ||||||||||||||||=|||||*
targets:1   GGUGUUUGGUUUCUAGGGACUAA   23

2.5 Sequence 1166 from Patent EP2985353 NA coding protein psRNATarget
XM_020542840.1
ncRNA:24   CCCACAAACCAAAGAUCUCUGAUA   1
  *||||||||||||||||=|||||*
targets:970   AGGUGUUUGGUUUCUAGGGACUAA   993

2.5 PREDICTED: Zea mays hypothetical protein (LOC103636172), transcript variant X1, mRNA NA coding protein psRNATarget
HI406614.1
ncRNA:24   CCCACAAACCAAAGAUCUCUGAUA   1
  |||||||||||||*|||||||||*
targets:128   GGGUGUUUGGUUUAUAGAGACUAA   151

2.5 Sequence 4739 from Patent EP2074227 NA coding protein psRNATarget
LQ238744.1
ncRNA:24   CCCACAAACCAAAGAUCUCUGAUA   1
  |||||||||||||*|||||||||*
targets:128   GGGUGUUUGGUUUAUAGAGACUAA   151

2.5 Sequence 4739 from Patent EP2985353 NA coding protein psRNATarget
JB167075.1
ncRNA:24   CCCACAAACCAAAGAUCUCUGAUA   1
  |||||||||||||*|||||||||*
targets:128   GGGUGUUUGGUUUAUAGAGACUAA   151

2.5 Sequence 4739 from Patent EP2559767 NA coding protein psRNATarget
EZ060524.1
ncRNA:24   CCCACAAACCAAAGAUCUCUGAUA   1
  |||||||||||||||||*|||||*
targets:42   GGGUGUUUGGUUUCUAGUGACUAA   65

2.5 TSA: Zea mays contig61646, mRNA sequence NA coding protein psRNATarget
EU961152.1
ncRNA:24   CCCACAAACCAAAGAUCUCUGAUA   1
  ||||||||||||||||||||*||*
targets:537   GGGUGUUUGGUUUCUAGAGAAUAA   560

2.5 Zea mays clone 232918 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001150110.1
ncRNA:24   CCCACAAACCAAAGAUCUCUGAUA   1
  ||||||||||||||||||||*||*
targets:537   GGGUGUUUGGUUUCUAGAGAAUAA   560

2.5 Zea mays hypothetical protein (LOC103639532), mRNA NA coding protein psRNATarget
AY104317.1
ncRNA:24   CCCACAAACCAAAGAUCUCUGAUA   1
  |||||||||||||*|||||||||*
targets:1594   GGGUGUUUGGUUUAUAGAGACUAA   1617

2.5 Zea mays PCO132144 mRNA sequence NA coding protein psRNATarget
EU941753.1
ncRNA:24   CCC-ACAAACCAAAGAUCUCUGAUA   1
  |||-||||||||||||||=|||||*
targets:2   GGGAUGUUUGGUUUCUAGGGACUAA   26

2.5 Zea mays clone 1469712 mRNA sequence NA coding protein psRNATarget
BT018349.1
ncRNA:24   CCC-ACAAACCAAAGAUCUCUGAUA   1
  |||-||||||||||||||=|||||*
targets:557   GGGAUGUUUGGUUUCUAGGGACUAA   581

2.5 Zea mays clone EL01T0403E10.c mRNA sequence NA coding protein psRNATarget
XM_020546796.1
ncRNA:24   CCC-ACAAACCAAAGAUCUCUGAUA   1
  |||-||||||||||||||=|||||*
targets:3401   GGGAUGUUUGGUUUCUAGGGACUAA   3425

2.5 PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020546795.1
ncRNA:24   CCC-ACAAACCAAAGAUCUCUGAUA   1
  |||-||||||||||||||=|||||*
targets:3476   GGGAUGUUUGGUUUCUAGGGACUAA   3500

2.5 PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020546794.1
ncRNA:24   CCC-ACAAACCAAAGAUCUCUGAUA   1
  |||-||||||||||||||=|||||*
targets:3526   GGGAUGUUUGGUUUCUAGGGACUAA   3550

2.5 PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020546793.1
ncRNA:24   CCC-ACAAACCAAAGAUCUCUGAUA   1
  |||-||||||||||||||=|||||*
targets:3563   GGGAUGUUUGGUUUCUAGGGACUAA   3587

2.5 PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X1, mRNA NA coding protein psRNATarget
EZ068389.1
ncRNA:24   CCC--ACAAACCAAAGAUCUCUGAUA   1
  |||--||||||||||||||||=|||*
targets:35   GGGAAUGUUUGGUUUCUAGAGGCUAA   60

2.5 TSA: Zea mays contig04024, mRNA sequence NA coding protein psRNATarget
HI403095.1
ncRNA:24   CCCACAAACCAAAGAUCUCUGAUA   1
  *||||||||||||||||*|||||*
targets:2   AGGUGUUUGGUUUCUAGUGACUAA   25

2.5 Sequence 1220 from Patent EP2074227 NA coding protein psRNATarget
JB163556.1
ncRNA:24   CCCACAAACCAAAGAUCUCUGAUA   1
  *||||||||||||||||*|||||*
targets:2   AGGUGUUUGGUUUCUAGUGACUAA   25

2.5 Sequence 1220 from Patent EP2559767 NA coding protein psRNATarget
LQ235225.1
ncRNA:24   CCCACAAACCAAAGAUCUCUGAUA   1
  *||||||||||||||||*|||||*
targets:2   AGGUGUUUGGUUUCUAGUGACUAA   25

2.5 Sequence 1220 from Patent EP2985353 NA coding protein psRNATarget
LQ235087.1
ncRNA:24   CCCACAAACCAAAGAUCUCUGAUA   1
  *||||||||||||||||*|||||*
targets:2   AGGUGUUUGGUUUCUAGUGACUAA   25

2.5 Sequence 1082 from Patent EP2985353 NA coding protein psRNATarget
JB163418.1
ncRNA:24   CCCACAAACCAAAGAUCUCUGAUA   1
  *||||||||||||||||*|||||*
targets:2   AGGUGUUUGGUUUCUAGUGACUAA   25

2.5 Sequence 1082 from Patent EP2559767 NA coding protein psRNATarget
HI402957.1
ncRNA:24   CCCACAAACCAAAGAUCUCUGAUA   1
  *||||||||||||||||*|||||*
targets:2   AGGUGUUUGGUUUCUAGUGACUAA   25

2.5 Sequence 1082 from Patent EP2074227 NA coding protein psRNATarget
AY104678.1
ncRNA:24   CCC-ACAAACCAAAGAUCUCUGAUA   1
  |||-|||||*||||||||||||||*
targets:1466   GGGAUGUUUUGUUUCUAGAGACUAA   1490

2.0 Zea mays PCO081661 mRNA sequence NA coding protein psRNATarget
NM_001111805.2
ncRNA:24   CCC-ACAAACCAAAGAUCUCUGAUA   1
  |||-|||||*||||||||||||||*
targets:1477   GGGAUGUUUUGUUUCUAGAGACUAA   1501

2.0 Zea mays uncharacterized LOC542191 (TIDP2941), mRNA NA coding protein psRNATarget
XM_020538341.1
ncRNA:24   CC-CACAAACCAAAGAUCUCUGAUA   1
  ||-|||||||||||||||*|||||*
targets:2133   GGUGUGUUUGGUUUCUAGUGACUAA   2157

2.5 PREDICTED: Zea mays uncharacterized vacuolar membrane protein YML018C-like (LOC109939917), mRNA NA coding protein psRNATarget
XM_020538340.1
ncRNA:24   CC-CACAAACCAAAGAUCUCUGAUA   1
  ||-|||||||||||||||*|||||*
targets:2133   GGUGUGUUUGGUUUCUAGUGACUAA   2157

2.5 PREDICTED: Zea mays uncharacterized vacuolar membrane protein YML018C-like (LOC109939916), transcript variant X2, mRNA NA coding protein psRNATarget
LQ235180.1
ncRNA:23   CCACAAACCAAAGAUCUCUGAUA   1
  |*||||||||||||||=|||||*
targets:1   GAUGUUUGGUUUCUAGGGACUAA   23

2.5 Sequence 1175 from Patent EP2985353 NA coding protein psRNATarget
HI403050.1
ncRNA:23   CCACAAACCAAAGAUCUCUGAUA   1
  |*||||||||||||||=|||||*
targets:1   GAUGUUUGGUUUCUAGGGACUAA   23

2.5 Sequence 1175 from Patent EP2074227 NA coding protein psRNATarget
JB163511.1
ncRNA:23   CCACAAACCAAAGAUCUCUGAUA   1
  |*||||||||||||||=|||||*
targets:1   GAUGUUUGGUUUCUAGGGACUAA   23

2.5 Sequence 1175 from Patent EP2559767 NA coding protein psRNATarget
BT065747.2
ncRNA:24   CCCA---CAAACCAAAGAUCUCUGAUA   1
  *|||---|||||||||||||=|||||*
targets:759   AGGUCAUGUUUGGUUUCUAGGGACUAA   785

2.5 Zea mays full-length cDNA clone ZM_BFc0062G24 mRNA, complete cds NA coding protein psRNATarget
NM_001154575.2
ncRNA:24   CCCACAAACCAAAGAUCUCUGAUA   1
  *|*||||||||||||||=|||||*
targets:1859   AGAUGUUUGGUUUCUAGGGACUAA   1882

2.5 Zea mays uncharacterized LOC100281656 (si605087c09), mRNA NA coding protein psRNATarget
EU957463.1
ncRNA:24   CCCACAAACCAAAGAUCUCUGAUA   1
  *|*||||||||||||||=|||||*
targets:1860   AGAUGUUUGGUUUCUAGGGACUAA   1883

2.5 Zea mays clone 1593330 selenium-binding protein-like mRNA, complete cds NA coding protein psRNATarget
BT053999.2
ncRNA:24   CCCA---CAAACCAAAGAUCUCUGAUA   1
  *|||---|||||||||||||=|||||*
targets:1929   AGGUCAUGUUUGGUUUCUAGGGACUAA   1955

2.5 Zea mays full-length cDNA clone ZM_BFc0109O10 mRNA, complete cds NA coding protein psRNATarget
NM_001152323.1
ncRNA:24   CCCA---CAAACCAAAGAUCUCUGAUA   1
  *|||---|||||||||||||=|||||*
targets:1929   AGGUCAUGUUUGGUUUCUAGGGACUAA   1955

2.5 Zea mays uncharacterized LOC100279302 (LOC100279302), mRNA NA coding protein psRNATarget
LQ235125.1
ncRNA:24   CCCACAAACCAAAGAUCUCUGAUA   1
  ||*||||||||||||||*|||||*
targets:2   GGAUGUUUGGUUUCUAGUGACUAA   25

2.5 Sequence 1120 from Patent EP2985353 NA coding protein psRNATarget
JB163456.1
ncRNA:24   CCCACAAACCAAAGAUCUCUGAUA   1
  ||*||||||||||||||*|||||*
targets:2   GGAUGUUUGGUUUCUAGUGACUAA   25

2.5 Sequence 1120 from Patent EP2559767 NA coding protein psRNATarget
HI402995.1
ncRNA:24   CCCACAAACCAAAGAUCUCUGAUA   1
  ||*||||||||||||||*|||||*
targets:2   GGAUGUUUGGUUUCUAGUGACUAA   25

2.5 Sequence 1120 from Patent EP2074227 NA coding protein psRNATarget
XM_008675724.2
ncRNA:24   CCC-ACAAACCAAAGAUCUCUGAUA   1
  |||-|*||||||||=|||||||||*
targets:1073   GGGAUAUUUGGUUUUUAGAGACUAA   1097

2.5 PREDICTED: Zea mays uncharacterized LOC103650056 (LOC103650056), mRNA NA coding protein psRNATarget
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