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BaseInfo

ncRNA ID novel_zma_miR8708
Species Zea mays
Class miRNA
Genome position Chr6:135565305-135565480 [-]
Reference genome RefGen_v4
Source SRR4237221
Length 24
Mature sequence(if miRNA) 1 - AGUCCCUAGAAACCAAACACCCCA - 24
Stem-loop(if miRNA) --        U        U  G   C  U      A           C    U     -       GC       A           
  GGGUGUUU GUUUCUAG GA UAA UU UAGUCC UCCAUUUUAUU CAUU UAGUC CUAAAUU  UAAAUAC GAAACUAAAAUA
  |||||||| |||||||| || ||| || |||||| ||||||||||| |||| ||||| |||||||  ||||||| |||||||||||G
  CCCACAAA CAAAGAUC CU AUU AA AUCAGG AGGUAAAAUAA GUAA AUCAG GAUUUAG  AUUUAUG CUUUGAUUUUGA
AC        C        C  G   A  U      G           A    C     U       UA       C           
Stem-loop sequence GGGUGUUUUGUUUCUAGUGAGUAACUUUUAGUCCAUCCAUUUUAUUCCAUUUUAGUCCUAAAUUGCUAAAUACAGAAACUAAAAUAGAGUUUUAGUUUCCGUAUUUAAUGAUUUAGUGACUACAAUGAAAUAAAAUGGAGGGACUAUAAAUUAGUCCCUAGAAACCAAACACCCCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020549827.1
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  |||||||||||||||=||||||||
targets:1843   UGGGGUGUUUGGUUUUUAGGGACU   1866

1.5 PREDICTED: Zea mays hypothetical protein (LOC100381696), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008674864.2
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  |||||||||||||||=||||||||
targets:2218   UGGGGUGUUUGGUUUUUAGGGACU   2241

1.5 PREDICTED: Zea mays hypothetical protein (LOC100381696), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001174508.1
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  |||||||||||||||=||||||||
targets:2277   UGGGGUGUUUGGUUUUUAGGGACU   2300

1.5 Zea mays hypothetical protein (LOC100381696), mRNA NA coding protein psRNATarget
BT062019.1
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  |||||||||||||||=||||||||
targets:2277   UGGGGUGUUUGGUUUUUAGGGACU   2300

1.5 Zea mays full-length cDNA clone ZM_BFb0206L01 mRNA, complete cds NA coding protein psRNATarget
HI403047.1
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *|||||||||||||||||||||||
targets:56   AGGGGUGUUUGGUUUCUAGGGACU   79

0.0 Sequence 1172 from Patent EP2074227 NA coding protein psRNATarget
LQ235177.1
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *|||||||||||||||||||||||
targets:56   AGGGGUGUUUGGUUUCUAGGGACU   79

0.0 Sequence 1172 from Patent EP2985353 NA coding protein psRNATarget
JB163508.1
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *|||||||||||||||||||||||
targets:56   AGGGGUGUUUGGUUUCUAGGGACU   79

0.0 Sequence 1172 from Patent EP2559767 NA coding protein psRNATarget
EU942443.1
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *|||||||||||||||||||||||
targets:461   GGGGGUGUUUGGUUUCUAGGGACU   484

0.0 Zea mays clone 1501876 mRNA sequence NA coding protein psRNATarget
EZ052166.1
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *|||||||||||||||||||||||
targets:748   GGGGGUGUUUGGUUUCUAGGGACU   771

0.0 TSA: Zea mays contig53286, mRNA sequence NA coding protein psRNATarget
XM_020553397.1
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *|||||||||||||||||||||||
targets:548   GGGGGUGUUUGGUUUCUAGGGACU   571

0.0 PREDICTED: Zea mays SANT/MYB protein (LOC100284980), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001139183.1
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *|||||||||||||||||||||||
targets:811   GGGGGUGUUUGGUUUCUAGGGACU   834

0.0 Zea mays hypothetical protein (LOC100194130), mRNA NA coding protein psRNATarget
BT036582.1
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *|||||||||||||||||||||||
targets:811   GGGGGUGUUUGGUUUCUAGGGACU   834

0.0 Zea mays full-length cDNA clone ZM_BFb0124H18 mRNA, complete cds NA coding protein psRNATarget
NM_001313850.1
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *|||||||||||||||||||||||
targets:1135   GGGGGUGUUUGGUUUCUAGGGACU   1158

0.0 Zea mays voltage-gated potassium channel beta subunit (LOC100282429), mRNA NA coding protein psRNATarget
BT088358.1
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *|||||||||||||||||||||||
targets:1135   GGGGGUGUUUGGUUUCUAGGGACU   1158

0.0 Zea mays full-length cDNA clone ZM_BFc0155C19 mRNA, complete cds NA coding protein psRNATarget
XM_008650759.2
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *|||||||||||||||||||||||
targets:1133   GGGGGUGUUUGGUUUCUAGGGACU   1156

0.0 PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008650758.2
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *|||||||||||||||||||||||
targets:1142   GGGGGUGUUUGGUUUCUAGGGACU   1165

0.0 PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008650753.2
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *|||||||||||||||||||||||
targets:1145   GGGGGUGUUUGGUUUCUAGGGACU   1168

0.0 PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008650754.2
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *|||||||||||||||||||||||
targets:1151   GGGGGUGUUUGGUUUCUAGGGACU   1174

0.0 PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020543841.1
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *|||||||||||||||||||||||
targets:916   AGGGGUGUUUGGUUUCUAGGGACU   939

0.0 PREDICTED: Zea mays lo1 pI allergen homolog 1 (lop1), transcript variant X1, mRNA NA coding protein psRNATarget
EU956227.1
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *|||||||||||||||||||||||
targets:1238   GGGGGUGUUUGGUUUCUAGGGACU   1261

0.0 Zea mays clone 1559264 mRNA sequence NA coding protein psRNATarget
BT085047.1
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *|||||||||||||||||||||||
targets:1189   GGGGGUGUUUGGUUUCUAGGGACU   1212

0.0 Zea mays full-length cDNA clone ZM_BFb0232J05 mRNA, complete cds NA coding protein psRNATarget
XM_020542419.1
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *|||||||||||||||||||||||
targets:2140   GGGGGUGUUUGGUUUCUAGGGACU   2163

0.0 PREDICTED: Zea mays ADP,ATP carrier protein 2, chloroplastic (LOC103637385), mRNA NA coding protein psRNATarget
XM_020550311.1
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *|||||||||||||||||||||||
targets:2443   AGGGGUGUUUGGUUUCUAGGGACU   2466

0.0 PREDICTED: Zea mays zinc finger CCCH domain-containing protein 67-like (LOC103650585), mRNA NA coding protein psRNATarget
XM_020545045.1
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *|||||||||||||||||||||||
targets:1918   GGGGGUGUUUGGUUUCUAGGGACU   1941

0.0 PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA NA coding protein psRNATarget
EZ111881.1
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *||||||||||||||=||||||||
targets:80   GGGGGUGUUUGGUUUUUAGGGACU   103

1.5 TSA: Zea mays contig47542, mRNA sequence NA coding protein psRNATarget
XM_020547858.1
ncRNA:24   ACC--CCACAAACCAAAGAUCCCUGA   1
  |||--|||||||||||||||||||||
targets:1535   UGGUGGGUGUUUGGUUUCUAGGGACU   1560

0.0 PREDICTED: Zea mays uncharacterized LOC100382535 (LOC100382535), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008682706.2
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *||||||||||||||=||||||||
targets:2251   AGGGGUGUUUGGUUUUUAGGGACU   2274

1.5 PREDICTED: Zea mays protein phosphatase 2C (LOC100286089), transcript variant X1, mRNA NA coding protein psRNATarget
HI403040.1
ncRNA:23   CCCCACAAACCAAAGAUCCCUGA   1
  *||||||||||||||||||||||
targets:1   UGGGUGUUUGGUUUCUAGGGACU   23

0.0 Sequence 1165 from Patent EP2074227 NA coding protein psRNATarget
LQ235170.1
ncRNA:23   CCCCACAAACCAAAGAUCCCUGA   1
  *||||||||||||||||||||||
targets:1   UGGGUGUUUGGUUUCUAGGGACU   23

0.0 Sequence 1165 from Patent EP2985353 NA coding protein psRNATarget
JB163501.1
ncRNA:23   CCCCACAAACCAAAGAUCCCUGA   1
  *||||||||||||||||||||||
targets:1   UGGGUGUUUGGUUUCUAGGGACU   23

0.0 Sequence 1165 from Patent EP2559767 NA coding protein psRNATarget
XM_008667360.2
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  **||||||||||||||||||||||
targets:1142   GUGGGUGUUUGGUUUCUAGGGACU   1165

0.0 PREDICTED: Zea mays GNAT transcription factor (LOC103644167), mRNA NA coding protein psRNATarget
EU941753.1
ncRNA:23   CCCC-ACAAACCAAAGAUCCCUGA   1
  ||||-|||||||||||||||||||
targets:1   GGGGAUGUUUGGUUUCUAGGGACU   24

2.0 Zea mays clone 1469712 mRNA sequence NA coding protein psRNATarget
BT018349.1
ncRNA:24   ACCCC-ACAAACCAAAGAUCCCUGA   1
  *||||-|||||||||||||||||||
targets:555   AGGGGAUGUUUGGUUUCUAGGGACU   579

2.0 Zea mays clone EL01T0403E10.c mRNA sequence NA coding protein psRNATarget
XM_020546796.1
ncRNA:24   ACCCC-ACAAACCAAAGAUCCCUGA   1
  *||||-|||||||||||||||||||
targets:3399   AGGGGAUGUUUGGUUUCUAGGGACU   3423

2.0 PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020546795.1
ncRNA:24   ACCCC-ACAAACCAAAGAUCCCUGA   1
  *||||-|||||||||||||||||||
targets:3474   AGGGGAUGUUUGGUUUCUAGGGACU   3498

2.0 PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020546794.1
ncRNA:24   ACCCC-ACAAACCAAAGAUCCCUGA   1
  *||||-|||||||||||||||||||
targets:3524   AGGGGAUGUUUGGUUUCUAGGGACU   3548

2.0 PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020546793.1
ncRNA:24   ACCCC-ACAAACCAAAGAUCCCUGA   1
  *||||-|||||||||||||||||||
targets:3561   AGGGGAUGUUUGGUUUCUAGGGACU   3585

2.0 PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X1, mRNA NA coding protein psRNATarget
JB167201.1
ncRNA:23   CCCCACAAACCAAAGAUCCCUGA   1
  |||||||||||||||||||*|||
targets:1   GGGGUGUUUGGUUUCUAGGUACU   23

1.5 Sequence 4865 from Patent EP2559767 NA coding protein psRNATarget
JB167198.1
ncRNA:23   CCCCACAAACCAAAGAUCCCUGA   1
  |||||||||||||||||||*|||
targets:1   GGGGUGUUUGGUUUCUAGGUACU   23

1.5 Sequence 4862 from Patent EP2559767 NA coding protein psRNATarget
LQ238870.1
ncRNA:23   CCCCACAAACCAAAGAUCCCUGA   1
  |||||||||||||||||||*|||
targets:1   GGGGUGUUUGGUUUCUAGGUACU   23

1.5 Sequence 4865 from Patent EP2985353 NA coding protein psRNATarget
HI406737.1
ncRNA:23   CCCCACAAACCAAAGAUCCCUGA   1
  |||||||||||||||||||*|||
targets:1   GGGGUGUUUGGUUUCUAGGUACU   23

1.5 Sequence 4862 from Patent EP2074227 NA coding protein psRNATarget
LQ238867.1
ncRNA:23   CCCCACAAACCAAAGAUCCCUGA   1
  |||||||||||||||||||*|||
targets:1   GGGGUGUUUGGUUUCUAGGUACU   23

1.5 Sequence 4862 from Patent EP2985353 NA coding protein psRNATarget
HI406740.1
ncRNA:23   CCCCACAAACCAAAGAUCCCUGA   1
  |||||||||||||||||||*|||
targets:1   GGGGUGUUUGGUUUCUAGGUACU   23

1.5 Sequence 4865 from Patent EP2074227 NA coding protein psRNATarget
EZ061563.1
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *||||||||||||||*||||||||
targets:316   GGGGGUGUUUGGUUUAUAGGGACU   339

1.5 TSA: Zea mays contig62685, mRNA sequence NA coding protein psRNATarget
EZ060524.1
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *||||||||||||||||||*||||
targets:40   GGGGGUGUUUGGUUUCUAGUGACU   63

1.5 TSA: Zea mays contig61646, mRNA sequence NA coding protein psRNATarget
BT088053.1
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *|||||||||||||||||||*|||
targets:801   CGGGGUGUUUGGUUUCUAGGUACU   824

1.5 Zea mays full-length cDNA clone ZM_BFb0380J10 mRNA, complete cds NA coding protein psRNATarget
XM_020542840.1
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *|*|||||||||||||||||||||
targets:968   AGAGGUGUUUGGUUUCUAGGGACU   991

0.0 PREDICTED: Zea mays hypothetical protein (LOC103636172), transcript variant X1, mRNA NA coding protein psRNATarget
BT039671.1
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *|||||||||||||||||||*|||
targets:1059   CGGGGUGUUUGGUUUCUAGGUACU   1082

1.5 Zea mays full-length cDNA clone ZM_BFc0037P09 mRNA, complete cds NA coding protein psRNATarget
EU962491.1
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *|||||||||||||||||||*|||
targets:1119   CGGGGUGUUUGGUUUCUAGGUACU   1142

1.5 Zea mays clone 243115 mRNA sequence NA coding protein psRNATarget
BT087555.1
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *|||||||||||||||||||*|||
targets:1173   CGGGGUGUUUGGUUUCUAGGUACU   1196

1.5 Zea mays full-length cDNA clone ZM_BFb0108F07 mRNA, complete cds NA coding protein psRNATarget
NM_001112602.2
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *||||||||||||||*||||||||
targets:1095   AGGGGUGUUUGGUUUAUAGGGACU   1118

1.5 Zea mays ferric-chelate reductase (NADH)2 (fcr2), mRNA NA coding protein psRNATarget
EU965238.1
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *||||||||||||||*||||||||
targets:1160   AGGGGUGUUUGGUUUAUAGGGACU   1183

1.5 Zea mays clone 284715 protein COQ10 A mRNA, complete cds NA coding protein psRNATarget
NM_001156492.1
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *||||||||||||||*||||||||
targets:1160   AGGGGUGUUUGGUUUAUAGGGACU   1183

1.5 Zea mays protein COQ10 A (LOC100283591), mRNA NA coding protein psRNATarget
NM_001136807.1
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *|||||||||||||||||||*|||
targets:1219   CGGGGUGUUUGGUUUCUAGGUACU   1242

1.5 Zea mays Protein LIKE COV 2 (LOC100191373), mRNA NA coding protein psRNATarget
BT033446.1
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *|||||||||||||||||||*|||
targets:1219   CGGGGUGUUUGGUUUCUAGGUACU   1242

1.5 Zea mays full-length cDNA clone ZM_BFb0157F18 mRNA, complete cds NA coding protein psRNATarget
EU967664.1
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *||||||||||||||*||||||||
targets:1095   AGGGGUGUUUGGUUUAUAGGGACU   1118

1.5 Zea mays clone 305169 NADH-cytochrome b5 reductase mRNA, complete cds NA coding protein psRNATarget
XM_008655999.2
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *|||||||||||||||||||*|||
targets:1160   CGGGGUGUUUGGUUUCUAGGUACU   1183

1.5 PREDICTED: Zea mays Protein LIKE COV 2 (LOC100191373), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001153051.1
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *||||||*||||||||||||||||
targets:783   AGGGGUGCUUGGUUUCUAGGGACU   806

1.0 Zea mays NAD(P)-binding Rossmann-fold superfamily protein (LOC100280114), mRNA NA coding protein psRNATarget
BT055601.1
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *||||||*||||||||||||||||
targets:783   AGGGGUGCUUGGUUUCUAGGGACU   806

1.0 Zea mays full-length cDNA clone ZM_BFc0063A22 mRNA, complete cds NA coding protein psRNATarget
EU957896.1
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *||||||||||||||*||||||||
targets:1239   AGGGGUGUUUGGUUUAUAGGGACU   1262

1.5 Zea mays clone 1630391 mRNA sequence NA coding protein psRNATarget
BT083492.2
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *||||||||||||||*||||||||
targets:645   AGGGGUGUUUGGUUUAUAGGGACU   668

1.5 Zea mays full-length cDNA clone ZM_BFb0003B18 mRNA, complete cds NA coding protein psRNATarget
XM_008656457.2
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *|||||||||||||||||*|||||
targets:1641   GGGGGUGUUUGGUUUCUAAGGACU   1664

1.5 PREDICTED: Zea mays programmed cell death protein 2 (LOC103634523), transcript variant X5, mRNA NA coding protein psRNATarget
EU956677.1
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *||||||||||||||||||*||||
targets:2008   GGGGGUGUUUGGUUUCUAGAGACU   2031

1.5 Zea mays clone 1570443 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_008654984.2
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *||||||||||||||*||||||||
targets:2902   GGGGGUGUUUGGUUUGUAGGGACU   2925

1.5 PREDICTED: Zea mays putative mixed-linked glucan synthase 1 (LOC103633281), mRNA NA coding protein psRNATarget
XM_008646834.2
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *||||*||||||||||||||||||
targets:4243   AGGGGAGUUUGGUUUCUAGGGACU   4266

1.0 PREDICTED: Zea mays hypothetical protein (LOC103626423), mRNA NA coding protein psRNATarget
HI403041.1
ncRNA:21   CCACAAACCAAAGAUCCCUGA   1
  |||||||||||||||||||||
targets:1   GGUGUUUGGUUUCUAGGGACU   21

0.0 Sequence 1166 from Patent EP2074227 NA coding protein psRNATarget
JB163502.1
ncRNA:21   CCACAAACCAAAGAUCCCUGA   1
  |||||||||||||||||||||
targets:1   GGUGUUUGGUUUCUAGGGACU   21

0.0 Sequence 1166 from Patent EP2559767 NA coding protein psRNATarget
JB163516.1
ncRNA:21   CCACAAACCAAAGAUCCCUGA   1
  |||||||||||||||||||||
targets:1   GGUGUUUGGUUUCUAGGGACU   21

0.0 Sequence 1180 from Patent EP2559767 NA coding protein psRNATarget
HI403052.1
ncRNA:21   CCACAAACCAAAGAUCCCUGA   1
  |||||||||||||||||||||
targets:1   GGUGUUUGGUUUCUAGGGACU   21

0.0 Sequence 1177 from Patent EP2074227 NA coding protein psRNATarget
LQ235185.1
ncRNA:21   CCACAAACCAAAGAUCCCUGA   1
  |||||||||||||||||||||
targets:1   GGUGUUUGGUUUCUAGGGACU   21

0.0 Sequence 1180 from Patent EP2985353 NA coding protein psRNATarget
JB163513.1
ncRNA:21   CCACAAACCAAAGAUCCCUGA   1
  |||||||||||||||||||||
targets:1   GGUGUUUGGUUUCUAGGGACU   21

0.0 Sequence 1177 from Patent EP2559767 NA coding protein psRNATarget
LQ235182.1
ncRNA:21   CCACAAACCAAAGAUCCCUGA   1
  |||||||||||||||||||||
targets:1   GGUGUUUGGUUUCUAGGGACU   21

0.0 Sequence 1177 from Patent EP2985353 NA coding protein psRNATarget
HI403055.1
ncRNA:21   CCACAAACCAAAGAUCCCUGA   1
  |||||||||||||||||||||
targets:1   GGUGUUUGGUUUCUAGGGACU   21

0.0 Sequence 1180 from Patent EP2074227 NA coding protein psRNATarget
LQ235171.1
ncRNA:21   CCACAAACCAAAGAUCCCUGA   1
  |||||||||||||||||||||
targets:1   GGUGUUUGGUUUCUAGGGACU   21

0.0 Sequence 1166 from Patent EP2985353 NA coding protein psRNATarget
DQ244473.1
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *|||||||||||||||||||||**
targets:963   GGGGGUGUUUGGUUUCUAGGGAAA   986

2.5 Zea mays clone 8025 mRNA sequence NA coding protein psRNATarget
BT064233.1
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  ***||||||||||||=||||||||
targets:2074   AAUGGUGUUUGGUUUUUAGGGACU   2097

1.5 Zea mays full-length cDNA clone ZM_BFc0150L11 mRNA, complete cds NA coding protein psRNATarget
NM_001174830.1
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  ***||||||||||||=||||||||
targets:2068   AAUGGUGUUUGGUUUUUAGGGACU   2091

1.5 Zea mays Tubulin binding cofactor C domain-containing protein (LOC100382067), mRNA NA coding protein psRNATarget
BT063047.1
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  ***||||||||||||=||||||||
targets:2068   AAUGGUGUUUGGUUUUUAGGGACU   2091

1.5 Zea mays full-length cDNA clone ZM_BFc0019F15 mRNA, complete cds NA coding protein psRNATarget
XM_008680551.2
ncRNA:24   ACCC-CACAAACCAAAGAUCCCUGA   1
  *|||-|||||||||||*||||||||
targets:806   AGGGAGUGUUUGGUUUAUAGGGACU   830

1.5 PREDICTED: Zea mays Plant-specific domain TIGR01589 family protein (pco120805), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001154575.2
ncRNA:24   ACCCC-ACAAACCAAAGAUCCCUGA   1
  *||*|-|||||||||||||||||||
targets:1856   AGGAGAUGUUUGGUUUCUAGGGACU   1880

2.0 Zea mays uncharacterized LOC100281656 (si605087c09), mRNA NA coding protein psRNATarget
EU957463.1
ncRNA:24   ACCCC-ACAAACCAAAGAUCCCUGA   1
  *||*|-|||||||||||||||||||
targets:1857   AGGAGAUGUUUGGUUUCUAGGGACU   1881

2.0 Zea mays clone 1593330 selenium-binding protein-like mRNA, complete cds NA coding protein psRNATarget
BT065747.2
ncRNA:24   ACC-------CCA---CAAACCAAAGAUCCCUGA   1
  |||-------|||---||||||||||||||||||
targets:750   UGGAAAUUAAGGUCAUGUUUGGUUUCUAGGGACU   783

3.0 Zea mays full-length cDNA clone ZM_BFc0062G24 mRNA, complete cds NA coding protein psRNATarget
HI403095.1
ncRNA:23   CCCCACAAACCAAAGAUCCCUGA   1
  |*||||||||||||||||*||||
targets:1   GAGGUGUUUGGUUUCUAGUGACU   23

1.5 Sequence 1220 from Patent EP2074227 NA coding protein psRNATarget
JB163556.1
ncRNA:23   CCCCACAAACCAAAGAUCCCUGA   1
  |*||||||||||||||||*||||
targets:1   GAGGUGUUUGGUUUCUAGUGACU   23

1.5 Sequence 1220 from Patent EP2559767 NA coding protein psRNATarget
LQ235225.1
ncRNA:23   CCCCACAAACCAAAGAUCCCUGA   1
  |*||||||||||||||||*||||
targets:1   GAGGUGUUUGGUUUCUAGUGACU   23

1.5 Sequence 1220 from Patent EP2985353 NA coding protein psRNATarget
LQ235087.1
ncRNA:23   CCCCACAAACCAAAGAUCCCUGA   1
  |*||||||||||||||||*||||
targets:1   GAGGUGUUUGGUUUCUAGUGACU   23

1.5 Sequence 1082 from Patent EP2985353 NA coding protein psRNATarget
HI402957.1
ncRNA:23   CCCCACAAACCAAAGAUCCCUGA   1
  |*||||||||||||||||*||||
targets:1   GAGGUGUUUGGUUUCUAGUGACU   23

1.5 Sequence 1082 from Patent EP2074227 NA coding protein psRNATarget
JB163418.1
ncRNA:23   CCCCACAAACCAAAGAUCCCUGA   1
  |*||||||||||||||||*||||
targets:1   GAGGUGUUUGGUUUCUAGUGACU   23

1.5 Sequence 1082 from Patent EP2559767 NA coding protein psRNATarget
BT017328.1
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  ****|||||||||||=||||||||
targets:743   ACAAGUGUUUGGUUUUUAGGGACU   766

1.5 Zea mays clone EL01N0320F08.c mRNA sequence NA coding protein psRNATarget
XM_020538340.1
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *||*|||||||||||||||*||||
targets:2132   AGGUGUGUUUGGUUUCUAGUGACU   2155

1.5 PREDICTED: Zea mays uncharacterized vacuolar membrane protein YML018C-like (LOC109939916), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020538341.1
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *||*|||||||||||||||*||||
targets:2132   AGGUGUGUUUGGUUUCUAGUGACU   2155

1.5 PREDICTED: Zea mays uncharacterized vacuolar membrane protein YML018C-like (LOC109939917), mRNA NA coding protein psRNATarget
HI403050.1
ncRNA:21   CCACAAACCAAAGAUCCCUGA   1
  |*|||||||||||||||||||
targets:1   GAUGUUUGGUUUCUAGGGACU   21

0.0 Sequence 1175 from Patent EP2074227 NA coding protein psRNATarget
JB163511.1
ncRNA:21   CCACAAACCAAAGAUCCCUGA   1
  |*|||||||||||||||||||
targets:1   GAUGUUUGGUUUCUAGGGACU   21

0.0 Sequence 1175 from Patent EP2559767 NA coding protein psRNATarget
LQ235180.1
ncRNA:21   CCACAAACCAAAGAUCCCUGA   1
  |*|||||||||||||||||||
targets:1   GAUGUUUGGUUUCUAGGGACU   21

0.0 Sequence 1175 from Patent EP2985353 NA coding protein psRNATarget
HI402994.1
ncRNA:21   CCACAAACCAAAGAUCCCUGA   1
  ||||||||||||*||||||||
targets:1   GGUGUUUGGUUUAUAGGGACU   21

1.5 Sequence 1119 from Patent EP2074227 NA coding protein psRNATarget
LQ235124.1
ncRNA:21   CCACAAACCAAAGAUCCCUGA   1
  ||||||||||||*||||||||
targets:1   GGUGUUUGGUUUAUAGGGACU   21

1.5 Sequence 1119 from Patent EP2985353 NA coding protein psRNATarget
JB163455.1
ncRNA:21   CCACAAACCAAAGAUCCCUGA   1
  ||||||||||||*||||||||
targets:1   GGUGUUUGGUUUAUAGGGACU   21

1.5 Sequence 1119 from Patent EP2559767 NA coding protein psRNATarget
XM_008676145.2
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  ***|||||||||||||||*|||||
targets:826   GUAGGUGUUUGGUUUCUAUGGACU   849

1.5 PREDICTED: Zea mays 23 kDa jasmonate-induced protein-like (LOC103650571), mRNA NA coding protein psRNATarget
NM_001152323.1
ncRNA:24   ACCCCA---CAAACCAAAGAUCCCUGA   1
  |**|||---||||||||||||||||||
targets:1927   UAAGGUCAUGUUUGGUUUCUAGGGACU   1953

3.0 Zea mays uncharacterized LOC100279302 (LOC100279302), mRNA NA coding protein psRNATarget
BT053999.2
ncRNA:24   ACCCCA---CAAACCAAAGAUCCCUGA   1
  |**|||---||||||||||||||||||
targets:1927   UAAGGUCAUGUUUGGUUUCUAGGGACU   1953

3.0 Zea mays full-length cDNA clone ZM_BFc0109O10 mRNA, complete cds NA coding protein psRNATarget
BT084832.2
ncRNA:24   ACCC--CACAAACCAAAGAUCCCUGA   1
  **||--||||||||||*|||||||||
targets:496   AAGGUAGUGUUUGGUUACUAGGGACU   521

1.5 Zea mays full-length cDNA clone ZM_BFb0189L01 mRNA, complete cds NA coding protein psRNATarget
AY104339.1
ncRNA:24   ACCC---CACAAACCAAAGAUCCCUGA   1
  ||||---||*|||||||||||*|||||
targets:1677   UGGGAGGGUAUUUGGUUUCUAUGGACU   1703

2.5 Zea mays PCO120561 mRNA sequence NA coding protein psRNATarget
XM_020551471.1
ncRNA:24   ACCC---CACAAACCAAAGAUCCCUGA   1
  ||||---||*|||||||||||*|||||
targets:2200   UGGGAGGGUAUUUGGUUUCUAUGGACU   2226

2.5 PREDICTED: Zea mays Outer envelope protein 64 chloroplastic (pco120561), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020551472.1
ncRNA:24   ACCC---CACAAACCAAAGAUCCCUGA   1
  ||||---||*|||||||||||*|||||
targets:2202   UGGGAGGGUAUUUGGUUUCUAUGGACU   2228

2.5 PREDICTED: Zea mays Outer envelope protein 64 chloroplastic (pco120561), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008678835.2
ncRNA:24   ACCC---CACAAACCAAAGAUCCCUGA   1
  ||||---||*|||||||||||*|||||
targets:2375   UGGGAGGGUAUUUGGUUUCUAUGGACU   2401

2.5 PREDICTED: Zea mays Outer envelope protein 64 chloroplastic (pco120561), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008678837.2
ncRNA:24   ACCC---CACAAACCAAAGAUCCCUGA   1
  ||||---||*|||||||||||*|||||
targets:2386   UGGGAGGGUAUUUGGUUUCUAUGGACU   2412

2.5 PREDICTED: Zea mays Outer envelope protein 64 chloroplastic (pco120561), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008647123.2
ncRNA:24   ACCC--CACAAACCAAAGAUCCCUGA   1
  **||--||||||||||*|||||||||
targets:2567   AAGGUAGUGUUUGGUUACUAGGGACU   2592

1.5 PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008647122.2
ncRNA:24   ACCC--CACAAACCAAAGAUCCCUGA   1
  **||--||||||||||*|||||||||
targets:2956   AAGGUAGUGUUUGGUUACUAGGGACU   2981

1.5 PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X1, mRNA NA coding protein psRNATarget
HI402995.1
ncRNA:23   CCCCACAAACCAAAGAUCCCUGA   1
  *||*||||||||||||||*||||
targets:1   AGGAUGUUUGGUUUCUAGUGACU   23

1.5 Sequence 1120 from Patent EP2074227 NA coding protein psRNATarget
LQ235125.1
ncRNA:23   CCCCACAAACCAAAGAUCCCUGA   1
  *||*||||||||||||||*||||
targets:1   AGGAUGUUUGGUUUCUAGUGACU   23

1.5 Sequence 1120 from Patent EP2985353 NA coding protein psRNATarget
JB163456.1
ncRNA:23   CCCCACAAACCAAAGAUCCCUGA   1
  *||*||||||||||||||*||||
targets:1   AGGAUGUUUGGUUUCUAGUGACU   23

1.5 Sequence 1120 from Patent EP2559767 NA coding protein psRNATarget
EU975071.1
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  **||*|||||||||||||*|||||
targets:659   AAGGAUGUUUGGUUUCUAAGGACU   682

1.5 Zea mays clone 466620 mRNA sequence NA coding protein psRNATarget
XM_008655750.2
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  **||*|||||||||||||*|||||
targets:2411   AAGGAUGUUUGGUUUCUAAGGACU   2434

1.5 PREDICTED: Zea mays PHD finger protein MALE STERILITY 1-like (LOC103643406), transcript variant X1, mRNA NA coding protein psRNATarget
AY104678.1
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *|||*|||||*||||||||*||||
targets:1465   AGGGAUGUUUUGUUUCUAGAGACU   1488

2.5 Zea mays PCO081661 mRNA sequence NA coding protein psRNATarget
NM_001111805.2
ncRNA:24   ACCCCACAAACCAAAGAUCCCUGA   1
  *|||*|||||*||||||||*||||
targets:1476   AGGGAUGUUUUGUUUCUAGAGACU   1499

2.5 Zea mays uncharacterized LOC542191 (TIDP2941), mRNA NA coding protein psRNATarget
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