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BaseInfo

ncRNA ID	novel_zma_miR8706
Species	Zea mays
Class	miRNA
Genome position	Chr6:159914420-159914490 [+]
Reference genome	RefGen_v4
Source	SRR4237221
Length	24
Mature sequence(if miRNA)	1 - AGUUCAUAAAUUGUUAAAUAAGGA - 24
Stem-loop(if miRNA)	--     A   A          A               AGUUC UAA UUGUUAAAUA GGAAACUAAAAUA   ||||| ||| |||||||||| ||||||||||||G   UCAGG AUU AAUGAUUUAU UCUUUGAUUUUGA AA     G   A          A
Stem-loop sequence	AGUUCAUAAAUUGUUAAAUAAGGAAACUAAAAUAGAGUUUUAGUUUCUAUAUUUAGUAAAUUAGGGACUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT019141.1	ncRNA:24   AGGAAUAAAUUGUUAAAUACUUGA   1   |||||||||||||||||||||||| targets:363   UCCUUAUUUAACAAUUUAUGAACU   386 Target Full Sequence	0.0	Zea mays clone Contig786.F mRNA sequence	NA	coding protein	psRNATarget
HI406713.1	ncRNA:24   AGGAAUAAAUUGUUAAAUACUUGA   1   |||||||||||||||||||||||| targets:238   UCCUUAUUUAACAAUUUAUGAACU   261 Target Full Sequence	0.0	Sequence 4838 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238843.1	ncRNA:24   AGGAAUAAAUUGUUAAAUACUUGA   1   |||||||||||||||||||||||| targets:238   UCCUUAUUUAACAAUUUAUGAACU   261 Target Full Sequence	0.0	Sequence 4838 from Patent EP2985353	NA	coding protein	psRNATarget
JB167174.1	ncRNA:24   AGGAAUAAAUUGUUAAAUACUUGA   1   |||||||||||||||||||||||| targets:238   UCCUUAUUUAACAAUUUAUGAACU   261 Target Full Sequence	0.0	Sequence 4838 from Patent EP2559767	NA	coding protein	psRNATarget
JB163731.1	ncRNA:24   AGGAAUAAAUUGUUAAAUACUUGA   1   |||||||||||=|||||||||||| targets:64   UCCUUAUUUAAUAAUUUAUGAACU   87 Target Full Sequence	1.5	Sequence 1395 from Patent EP2559767	NA	coding protein	psRNATarget
HI403270.1	ncRNA:24   AGGAAUAAAUUGUUAAAUACUUGA   1   |||||||||||=|||||||||||| targets:64   UCCUUAUUUAAUAAUUUAUGAACU   87 Target Full Sequence	1.5	Sequence 1395 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235400.1	ncRNA:24   AGGAAUAAAUUGUUAAAUACUUGA   1   |||||||||||=|||||||||||| targets:64   UCCUUAUUUAAUAAUUUAUGAACU   87 Target Full Sequence	1.5	Sequence 1395 from Patent EP2985353	NA	coding protein	psRNATarget
HI403417.1	ncRNA:24   AGGAAUAAAUUGUUAAAUACUUGA   1   *||||||||||||||||||||||| targets:38   ACCUUAUUUAACAAUUUAUGAACU   61 Target Full Sequence	0.0	Sequence 1542 from Patent EP2074227	NA	coding protein	psRNATarget
JB163903.1	ncRNA:24   AGGAAUAAAUUGUUAAAUACUUGA   1   *||||||||||||||||||||||| targets:38   ACCUUAUUUAACAAUUUAUGAACU   61 Target Full Sequence	0.0	Sequence 1567 from Patent EP2559767	NA	coding protein	psRNATarget
HI403442.1	ncRNA:24   AGGAAUAAAUUGUUAAAUACUUGA   1   *||||||||||||||||||||||| targets:38   ACCUUAUUUAACAAUUUAUGAACU   61 Target Full Sequence	0.0	Sequence 1567 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235547.1	ncRNA:24   AGGAAUAAAUUGUUAAAUACUUGA   1   *||||||||||||||||||||||| targets:38   ACCUUAUUUAACAAUUUAUGAACU   61 Target Full Sequence	0.0	Sequence 1542 from Patent EP2985353	NA	coding protein	psRNATarget
JB163878.1	ncRNA:24   AGGAAUAAAUUGUUAAAUACUUGA   1   *||||||||||||||||||||||| targets:38   ACCUUAUUUAACAAUUUAUGAACU   61 Target Full Sequence	0.0	Sequence 1542 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235572.1	ncRNA:24   AGGAAUAAAUUGUUAAAUACUUGA   1   *||||||||||||||||||||||| targets:38   ACCUUAUUUAACAAUUUAUGAACU   61 Target Full Sequence	0.0	Sequence 1567 from Patent EP2985353	NA	coding protein	psRNATarget
BT085047.1	ncRNA:24   AGGAAUAAAUUGUUAAAUACUUGA   1   |||*|||||||||||||||||||| targets:1289   UCCCUAUUUAACAAUUUAUGAACU   1312 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0232J05 mRNA, complete cds	NA	coding protein	psRNATarget
HI403448.1	ncRNA:24   AGGAAUAAAUUGUUAAAUACUUGA   1   |||*|||||||||||||||||||| targets:64   UCCCUAUUUAACAAUUUAUGAACU   87 Target Full Sequence	0.0	Sequence 1573 from Patent EP2074227	NA	coding protein	psRNATarget
JB163824.1	ncRNA:24   AGGAAUAAAUUGUUAAAUACUUGA   1   |||*|||||||||||||||||||| targets:64   UCCCUAUUUAACAAUUUAUGAACU   87 Target Full Sequence	0.0	Sequence 1488 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235578.1	ncRNA:24   AGGAAUAAAUUGUUAAAUACUUGA   1   |||*|||||||||||||||||||| targets:64   UCCCUAUUUAACAAUUUAUGAACU   87 Target Full Sequence	0.0	Sequence 1573 from Patent EP2985353	NA	coding protein	psRNATarget
JB163852.1	ncRNA:24   AGGAAUAAAUUGUUAAAUACUUGA   1   |||*|||||||||||||||||||| targets:64   UCCCUAUUUAACAAUUUAUGAACU   87 Target Full Sequence	0.0	Sequence 1516 from Patent EP2559767	NA	coding protein	psRNATarget
JB163909.1	ncRNA:24   AGGAAUAAAUUGUUAAAUACUUGA   1   |||*|||||||||||||||||||| targets:64   UCCCUAUUUAACAAUUUAUGAACU   87 Target Full Sequence	0.0	Sequence 1573 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235493.1	ncRNA:24   AGGAAUAAAUUGUUAAAUACUUGA   1   |||*|||||||||||||||||||| targets:64   UCCCUAUUUAACAAUUUAUGAACU   87 Target Full Sequence	0.0	Sequence 1488 from Patent EP2985353	NA	coding protein	psRNATarget
HI403391.1	ncRNA:24   AGGAAUAAAUUGUUAAAUACUUGA   1   |||*|||||||||||||||||||| targets:64   UCCCUAUUUAACAAUUUAUGAACU   87 Target Full Sequence	0.0	Sequence 1516 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235521.1	ncRNA:24   AGGAAUAAAUUGUUAAAUACUUGA   1   |||*|||||||||||||||||||| targets:64   UCCCUAUUUAACAAUUUAUGAACU   87 Target Full Sequence	0.0	Sequence 1516 from Patent EP2985353	NA	coding protein	psRNATarget
HI403363.1	ncRNA:24   AGGAAUAAAUUGUUAAAUACUUGA   1   |||*|||||||||||||||||||| targets:64   UCCCUAUUUAACAAUUUAUGAACU   87 Target Full Sequence	0.0	Sequence 1488 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008651702.2	ncRNA:24   AGGAAUAAAUUGUUAAAUACUUGA   1   |||*||||||=||||||||||||| targets:551   UCCGUAUUUAGCAAUUUAUGAACU   574 Target Full Sequence	1.0	PREDICTED: Zea mays type IV inositol polyphosphate 5-phosphatase 3 (LOC103630655), transcript variant X3, mRNA	NA	coding protein	psRNATarget
HI403360.1	ncRNA:24   AGGAAUAAAUUGUUAAAUACUUGA   1   |||*||||||||||||||||||=| targets:64   UCCAUAUUUAACAAUUUAUGAAUU   87 Target Full Sequence	1.5	Sequence 1485 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235490.1	ncRNA:24   AGGAAUAAAUUGUUAAAUACUUGA   1   |||*||||||||||||||||||=| targets:64   UCCAUAUUUAACAAUUUAUGAAUU   87 Target Full Sequence	1.5	Sequence 1485 from Patent EP2985353	NA	coding protein	psRNATarget
JB163821.1	ncRNA:24   AGGAAUAAAUUGUUAAAUACUUGA   1   |||*||||||||||||||||||=| targets:64   UCCAUAUUUAACAAUUUAUGAAUU   87 Target Full Sequence	1.5	Sequence 1485 from Patent EP2559767	NA	coding protein	psRNATarget
JB163867.1	ncRNA:24   AGGAAUAAAUUGUUAAAUACUUGA   1   |||*||||||=||||||||||||| targets:63   UCCCUAUUUAGCAAUUUAUGAACU   86 Target Full Sequence	1.0	Sequence 1531 from Patent EP2559767	NA	coding protein	psRNATarget
HI403406.1	ncRNA:24   AGGAAUAAAUUGUUAAAUACUUGA   1   |||*||||||=||||||||||||| targets:63   UCCCUAUUUAGCAAUUUAUGAACU   86 Target Full Sequence	1.0	Sequence 1531 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235536.1	ncRNA:24   AGGAAUAAAUUGUUAAAUACUUGA   1   |||*||||||=||||||||||||| targets:63   UCCCUAUUUAGCAAUUUAUGAACU   86 Target Full Sequence	1.0	Sequence 1531 from Patent EP2985353	NA	coding protein	psRNATarget
HI403351.1	ncRNA:24   AGGA-AUAAA-UUGUUAAAUACUUGA   1   |=||-|||||-||||||||||||||| targets:63   UUCUCUAUUUUAACAAUUUAUGAACU   88 Target Full Sequence	2.0	Sequence 1476 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235481.1	ncRNA:24   AGGA-AUAAA-UUGUUAAAUACUUGA   1   |=||-|||||-||||||||||||||| targets:63   UUCUCUAUUUUAACAAUUUAUGAACU   88 Target Full Sequence	2.0	Sequence 1476 from Patent EP2985353	NA	coding protein	psRNATarget
JB163812.1	ncRNA:24   AGGA-AUAAA-UUGUUAAAUACUUGA   1   |=||-|||||-||||||||||||||| targets:63   UUCUCUAUUUUAACAAUUUAUGAACU   88 Target Full Sequence	2.0	Sequence 1476 from Patent EP2559767	NA	coding protein	psRNATarget
JB163892.1	ncRNA:24   AGGAAUAAAUUGUUAAAUACUUGA   1   |||*||||||||||||||||||*| targets:64   UCCCUAUUUAACAAUUUAUGAAGU   87 Target Full Sequence	1.5	Sequence 1556 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235561.1	ncRNA:24   AGGAAUAAAUUGUUAAAUACUUGA   1   |||*||||||||||||||||||*| targets:64   UCCCUAUUUAACAAUUUAUGAAGU   87 Target Full Sequence	1.5	Sequence 1556 from Patent EP2985353	NA	coding protein	psRNATarget
HI403431.1	ncRNA:24   AGGAAUAAAUUGUUAAAUACUUGA   1   |||*||||||||||||||||||*| targets:64   UCCCUAUUUAACAAUUUAUGAAGU   87 Target Full Sequence	1.5	Sequence 1556 from Patent EP2074227	NA	coding protein	psRNATarget
JB163726.1	ncRNA:24   AGGAAUAAAUUGUUAAAUACUUGA   1   |||*|||||||||||||||*|||| targets:64   UCCCUAUUUAACAAUUUAUAAACU   87 Target Full Sequence	1.5	Sequence 1390 from Patent EP2559767	NA	coding protein	psRNATarget
HI403265.1	ncRNA:24   AGGAAUAAAUUGUUAAAUACUUGA   1   |||*|||||||||||||||*|||| targets:64   UCCCUAUUUAACAAUUUAUAAACU   87 Target Full Sequence	1.5	Sequence 1390 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235395.1	ncRNA:24   AGGAAUAAAUUGUUAAAUACUUGA   1   |||*|||||||||||||||*|||| targets:64   UCCCUAUUUAACAAUUUAUAAACU   87 Target Full Sequence	1.5	Sequence 1390 from Patent EP2985353	NA	coding protein	psRNATarget
HI406819.1	ncRNA:24   AGGAAUAAAUUGUUAAAUACUUGA   1   |||*|||||||||||||||*|||| targets:46   UCCCUAUUUAACAAUUUAUAAACU   69 Target Full Sequence	1.5	Sequence 4944 from Patent EP2074227	NA	coding protein	psRNATarget
JB167280.1	ncRNA:24   AGGAAUAAAUUGUUAAAUACUUGA   1   |||*|||||||||||||||*|||| targets:46   UCCCUAUUUAACAAUUUAUAAACU   69 Target Full Sequence	1.5	Sequence 4944 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238949.1	ncRNA:24   AGGAAUAAAUUGUUAAAUACUUGA   1   |||*|||||||||||||||*|||| targets:46   UCCCUAUUUAACAAUUUAUAAACU   69 Target Full Sequence	1.5	Sequence 4944 from Patent EP2985353	NA	coding protein	psRNATarget
JB163864.1	ncRNA:24   AGGA-AUAAAUUGUUAAAUACUUGA   1   |=||-||||||||||*||||||||| targets:63   UUCUCUAUUUAACAACUUAUGAACU   87 Target Full Sequence	1.5	Sequence 1528 from Patent EP2559767	NA	coding protein	psRNATarget
HI403403.1	ncRNA:24   AGGA-AUAAAUUGUUAAAUACUUGA   1   |=||-||||||||||*||||||||| targets:63   UUCUCUAUUUAACAACUUAUGAACU   87 Target Full Sequence	1.5	Sequence 1528 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235533.1	ncRNA:24   AGGA-AUAAAUUGUUAAAUACUUGA   1   |=||-||||||||||*||||||||| targets:63   UUCUCUAUUUAACAACUUAUGAACU   87 Target Full Sequence	1.5	Sequence 1528 from Patent EP2985353	NA	coding protein	psRNATarget