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BaseInfo

ncRNA ID	novel_zma_miR8699
Species	Zea mays
Class	miRNA
Genome position	Chr5:69064584-69064677 [-]
Reference genome	RefGen_v4
Source	SRR4237221
Length	24
Mature sequence(if miRNA)	1 - UGGCACACCGGACUGUCUGGUGGC - 24
Stem-loop(if miRNA)	--        U        GA    G -     GAGC      G  CGA   CACCGGAC GUCCGGUG  CCAG C UGUCA    UCCAAC GU   A   |||||||| ||||||||  |||| | |||||    |||||| ||   C   GUGGUCUG CAGGCCAC  GGUC G GCAGU    GGGUUG CA   C CG        U        AC    G U     ----      G  AUC
Stem-loop sequence	CACCGGACUGUCCGGUGGACCAGGCUGUCAGAGCUCCAACGGUCGAACCCUAACGGUUGGGUGACGUGGCUGGCACACCGGACUGUCUGGUGGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI409909.1	ncRNA:24   CGGUGGUCUGUCAGGCCACACGGU   1   *|||||=||||||||||||||||| targets:38   ACCACCGGACAGUCCGGUGUGCCA   61 Target Full Sequence	1.0	Sequence 8034 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242039.1	ncRNA:24   CGGUGGUCUGUCAGGCCACACGGU   1   *|||||=||||||||||||||||| targets:38   ACCACCGGACAGUCCGGUGUGCCA   61 Target Full Sequence	1.0	Sequence 8034 from Patent EP2985353	NA	coding protein	psRNATarget
JB170370.1	ncRNA:24   CGGUGGUCUGUCAGGCCACACGGU   1   *|||||=||||||||||||||||| targets:38   ACCACCGGACAGUCCGGUGUGCCA   61 Target Full Sequence	1.0	Sequence 8034 from Patent EP2559767	NA	coding protein	psRNATarget
HI409038.1	ncRNA:24   CGGUGGUCUGUCAGGCCACACGGU   1   *|||||=||||||||||||||||| targets:36   ACCACCGGACAGUCCGGUGUGCCA   59 Target Full Sequence	1.0	Sequence 7163 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241068.1	ncRNA:24   CGGUGGUCUGUCAGGCCACACGGU   1   *|||||=||||||||||||||||| targets:36   ACCACCGGACAGUCCGGUGUGCCA   59 Target Full Sequence	1.0	Sequence 7063 from Patent EP2985353	NA	coding protein	psRNATarget
JB169399.1	ncRNA:24   CGGUGGUCUGUCAGGCCACACGGU   1   *|||||=||||||||||||||||| targets:36   ACCACCGGACAGUCCGGUGUGCCA   59 Target Full Sequence	1.0	Sequence 7063 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242313.1	ncRNA:24   CGGUGGUCUGUCAGGCCACACGGU   1   *|||||=||||||||||||||||| targets:36   ACCACCGGACAGUCCGGUGUGCCA   59 Target Full Sequence	1.0	Sequence 8308 from Patent EP2985353	NA	coding protein	psRNATarget
LQ241168.1	ncRNA:24   CGGUGGUCUGUCAGGCCACACGGU   1   *|||||=||||||||||||||||| targets:36   ACCACCGGACAGUCCGGUGUGCCA   59 Target Full Sequence	1.0	Sequence 7163 from Patent EP2985353	NA	coding protein	psRNATarget
HI408938.1	ncRNA:24   CGGUGGUCUGUCAGGCCACACGGU   1   *|||||=||||||||||||||||| targets:36   ACCACCGGACAGUCCGGUGUGCCA   59 Target Full Sequence	1.0	Sequence 7063 from Patent EP2074227	NA	coding protein	psRNATarget
HI410183.1	ncRNA:24   CGGUGGUCUGUCAGGCCACACGGU   1   *|||||=||||||||||||||||| targets:36   ACCACCGGACAGUCCGGUGUGCCA   59 Target Full Sequence	1.0	Sequence 8308 from Patent EP2074227	NA	coding protein	psRNATarget
JB170644.1	ncRNA:24   CGGUGGUCUGUCAGGCCACACGGU   1   *|||||=||||||||||||||||| targets:36   ACCACCGGACAGUCCGGUGUGCCA   59 Target Full Sequence	1.0	Sequence 8308 from Patent EP2559767	NA	coding protein	psRNATarget
JB169499.1	ncRNA:24   CGGUGGUCUGUCAGGCCACACGGU   1   *|||||=||||||||||||||||| targets:36   ACCACCGGACAGUCCGGUGUGCCA   59 Target Full Sequence	1.0	Sequence 7163 from Patent EP2559767	NA	coding protein	psRNATarget
BT066461.2	ncRNA:24   CGGUGGUCUGUCAGGCCACACGGU   1   *|||||=||||||||||||||||| targets:856   ACCACCGGACAGUCCGGUGUGCCA   879 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds	NA	coding protein	psRNATarget
BT066461.2	ncRNA:24   CG-GUGGUCUGUCAGGCCACACGGU   1   ||-|||||||||||||||||*|||| targets:488   GCGCACCAGACAGUCCGGUGCGCCA   512 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175715.1	ncRNA:24   CG-GUGGUCUGUCAGGCCACACGGU   1   ||-||||=||||||||||||||||| targets:783   GCGCACCGGACAGUCCGGUGUGCCA   807 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA	NA	coding protein	psRNATarget
BT066013.2	ncRNA:24   CG-GUGGUCUGUCAGGCCACACGGU   1   ||-||||=||||||||||||||||| targets:783   GCGCACCGGACAGUCCGGUGUGCCA   807 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds	NA	coding protein	psRNATarget
HI410005.1	ncRNA:24   CG-GUGGUCUGUCAGGCCACACGGU   1   ||-|||||||||||||||||*|||| targets:8   GCGCACCAGACAGUCCGGUGCGCCA   32 Target Full Sequence	1.5	Sequence 8130 from Patent EP2074227	NA	coding protein	psRNATarget
JB170466.1	ncRNA:24   CG-GUGGUCUGUCAGGCCACACGGU   1   ||-|||||||||||||||||*|||| targets:8   GCGCACCAGACAGUCCGGUGCGCCA   32 Target Full Sequence	1.5	Sequence 8130 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242135.1	ncRNA:24   CG-GUGGUCUGUCAGGCCACACGGU   1   ||-|||||||||||||||||*|||| targets:8   GCGCACCAGACAGUCCGGUGCGCCA   32 Target Full Sequence	1.5	Sequence 8130 from Patent EP2985353	NA	coding protein	psRNATarget
EU940831.1	ncRNA:24   CGGUGGUCUGUCAGGCCACACGGU   1   *|||||=|||||||||||||*||| targets:539   ACCACCGGACAGUCCGGUGUACCA   562 Target Full Sequence	2.5	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
EZ065990.1	ncRNA:24   CG-GUGGUCUGUCAGGCCACACGGU   1   ||-||||=||||||||||||*|||| targets:3   GCGCACCGGACAGUCCGGUGCGCCA   27 Target Full Sequence	2.5	TSA: Zea mays contig01624, mRNA sequence	NA	coding protein	psRNATarget
EZ091678.1	ncRNA:24   CG-GUGGUCUGUCAGGCCACACGGU   1   ||-||||=|||*||||||||||||| targets:15   GCGCACCGGACUGUCCGGUGUGCCA   39 Target Full Sequence	2.0	TSA: Zea mays contig27327, mRNA sequence	NA	coding protein	psRNATarget
LQ241860.1	ncRNA:24   CG-GUGGUCUGUCAGGCCACACGGU   1   ||-||||=|||*||||||||||||| targets:5   GCGCACCGGACUGUCCGGUGUGCCA   29 Target Full Sequence	2.0	Sequence 7855 from Patent EP2985353	NA	coding protein	psRNATarget
JB170191.1	ncRNA:24   CG-GUGGUCUGUCAGGCCACACGGU   1   ||-||||=|||*||||||||||||| targets:5   GCGCACCGGACUGUCCGGUGUGCCA   29 Target Full Sequence	2.0	Sequence 7855 from Patent EP2559767	NA	coding protein	psRNATarget
HI409730.1	ncRNA:24   CG-GUGGUCUGUCAGGCCACACGGU   1   ||-||||=|||*||||||||||||| targets:5   GCGCACCGGACUGUCCGGUGUGCCA   29 Target Full Sequence	2.0	Sequence 7855 from Patent EP2074227	NA	coding protein	psRNATarget
EZ106959.1	ncRNA:24   CG-GUGGUCUGUCAGGCCACACGGU   1   ||-||||=||||||||||||*|||| targets:99   GCACACCGGACAGUCCGGUGCGCCA   123 Target Full Sequence	2.5	TSA: Zea mays contig42617, mRNA sequence	NA	coding protein	psRNATarget
EZ108756.1	ncRNA:24   CG-GUGGUCUGUCAGGCCACACGGU   1   ||-||||=||||||||||||*|||| targets:149   GCGCACCGGACAGUCCGGUGCGCCA   173 Target Full Sequence	2.5	TSA: Zea mays contig44415, mRNA sequence	NA	coding protein	psRNATarget
BT086229.2	ncRNA:24   CG-GUGGUCUGUCAGGCCACACGGU   1   ||-|||==||||||||||||||||* targets:537   GCACACUGGACAGUCCGGUGUGCCU   561 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds	NA	coding protein	psRNATarget
BT086229.2	ncRNA:24   CGGUGGUCUGUCAGGCCACACGGU   1   **||||=||||||||||||||*|| targets:834   UGCACCGGACAGUCCGGUGUGGCA   857 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds	NA	coding protein	psRNATarget
EZ078322.1	ncRNA:24   CGGUGGUCUGUCAGGCCACACGGU   1   *=||||=|||*||||||||||||| targets:29   UUCACCGGACUGUCCGGUGUGCCA   52 Target Full Sequence	2.0	TSA: Zea mays contig13961, mRNA sequence	NA	coding protein	psRNATarget
EZ077288.1	ncRNA:24   CGGUGGUCUGUCAGGCCACACGGU   1   *=||||||||*||=|||||||||| targets:41   UUCACCAGACUGUUCGGUGUGCCA   64 Target Full Sequence	2.5	TSA: Zea mays contig12925, mRNA sequence	NA	coding protein	psRNATarget
EU948808.1	ncRNA:24   CG-GUGGUCUGUCAGGCCACACGGU   1   ||-||||=|||*||||||||||||| targets:299   GCGCACCGGACUGUCCGGUGUGCCA   323 Target Full Sequence	2.0	Zea mays clone 385792 mRNA sequence	NA	coding protein	psRNATarget
BT083610.2	ncRNA:24   CG-GUGGUCUGUCAGGCCACACGGU   1   ||-||||=||||||||||||*|||| targets:478   GCGCACCGGACAGUCCGGUGCGCCA   502 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
BT083610.2	ncRNA:24   CG-GUGGUCUGUCAGGCCACACGGU   1   ||-||||=||||||||||||*|||| targets:802   GCACACCGGACAGUCCGGUGCGCCA   826 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
EU952168.1	ncRNA:24   CG-GUGGUCUGUCAGGCCACACGGU   1   ||-||||=|||*||||||||||||| targets:306   GCGCACCGGACUGUCCGGUGUGCCA   330 Target Full Sequence	2.0	Zea mays clone 1215356 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT069667.1	ncRNA:24   CG-GUGGUCUGUCAGGCCACACGGU   1   ||-||||=|||*||||||||||||| targets:1275   GCGCACCGGACUGUCCGGUGUGCCA   1299 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0206D24 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176839.1	ncRNA:24   CG-GUGGUCUGUCAGGCCACACGGU   1   ||-||||=|||*||||||||||||| targets:1275   GCGCACCGGACUGUCCGGUGUGCCA   1299 Target Full Sequence	2.0	Zea mays uncharacterized LOC100384275 (LOC100384275), mRNA	NA	coding protein	psRNATarget
BT060603.1	ncRNA:24   CG-GUGGUCUGUCAGGCCACACGGU   1   ||-||||=|||*||||||||||||| targets:1064   GCACACCGGACUGUCCGGUGUGCCA   1088 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0021N16 mRNA, complete cds	NA	coding protein	psRNATarget
BT069074.2	ncRNA:24   CGGUGGUCUGUCAGGCCACACGGU   1   **||||=||||||||||||*|||| targets:767   UGCACCGGACAGUCCGGUGCGCCA   790 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds	NA	coding protein	psRNATarget
BT042818.1	ncRNA:24   CGGUGGUCUGUCAGGCCACACGGU   1   *=||||=|||*||||||||||||| targets:613   UUCACCGGACUGUCCGGUGUGCCA   636 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0047A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT088050.1	ncRNA:24   CGGUGGUCUGUCAGGCCACACGGU   1   ||||=|=|||*||||||||||||* targets:1313   GCCAUCGGACUGUCCGGUGUGCCU   1336 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0379I10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196891.1	ncRNA:24   CGGUGGUCUGUCAGGCCACACGGU   1   ||||=|=|||*||||||||||||* targets:1313   GCCAUCGGACUGUCCGGUGUGCCU   1336 Target Full Sequence	3.0	Zea mays uncharacterized LOC100502413 (LOC100502413), mRNA	NA	coding protein	psRNATarget
LQ241540.1	ncRNA:24   CGGUGGUCUGUCAGGCCACACGGU   1   **||||=||||||||||||*|||| targets:97   UGCACCGGACAGUCCGGUGCGCCA   120 Target Full Sequence	2.5	Sequence 7535 from Patent EP2985353	NA	coding protein	psRNATarget
JB169871.1	ncRNA:24   CGGUGGUCUGUCAGGCCACACGGU   1   **||||=||||||||||||*|||| targets:97   UGCACCGGACAGUCCGGUGCGCCA   120 Target Full Sequence	2.5	Sequence 7535 from Patent EP2559767	NA	coding protein	psRNATarget
HI409410.1	ncRNA:24   CGGUGGUCUGUCAGGCCACACGGU   1   **||||=||||||||||||*|||| targets:97   UGCACCGGACAGUCCGGUGCGCCA   120 Target Full Sequence	2.5	Sequence 7535 from Patent EP2074227	NA	coding protein	psRNATarget
BT016820.1	ncRNA:24   CG-GUGGUCUGUCAGGCCACACGGU   1   ||-||||=|||*||||||||||||= targets:207   GCACACCGGACUGUCCGGUGUGCCG   231 Target Full Sequence	3.0	Zea mays clone Contig653 mRNA sequence	NA	coding protein	psRNATarget
NM_001174416.1	ncRNA:24   CGGUGGUCUGUCAGGCCACACGGU   1   **||||=||||||||||||*|||| targets:593   UGCACCGGACAGUCCGGUGCGCCA   616 Target Full Sequence	2.5	Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA	NA	coding protein	psRNATarget
BT061709.2	ncRNA:24   CGGUGGUCUGUCAGGCCACACGGU   1   **||||=||||||||||||*|||| targets:593   UGCACCGGACAGUCCGGUGCGCCA   616 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds	NA	coding protein	psRNATarget
BT018386.1	ncRNA:24   CG-GUGGUCUGUCAGGCCACACGGU   1   ||-|||==|||*||||||||||||| targets:775   GCACACUGGACUGUCCGGUGUGCCA   799 Target Full Sequence	3.0	Zea mays clone EL01N0313G04.d mRNA sequence	NA	coding protein	psRNATarget
EU947420.1	ncRNA:24   CGGUGGUCUGUCAGGCCACACGGU   1   *|||||=|||*||||||||||||* targets:583   ACCACCGGACUGUCCGGUGUGCCC   606 Target Full Sequence	3.0	Zea mays clone 342805 mRNA sequence	NA	coding protein	psRNATarget
BT064671.1	ncRNA:24   CGGUGGUCUGUCAGGCCACACGGU   1   **||||=|||*||||||||||||| targets:1109   AGCACCGGACUGUCCGGUGUGCCA   1132 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0008J22 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020542612.1	ncRNA:24   CGGUGGUCUGUCAGGCCACACGGU   1   *=||=|=|||*||||||||||||| targets:1243   UUCAUCGGACUGUCCGGUGUGCCA   1266 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103635109 (LOC103635109), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008657658.2	ncRNA:24   CGGUGGUCUGUCAGGCCACACGGU   1   *=||=|=|||*||||||||||||| targets:1327   UUCAUCGGACUGUCCGGUGUGCCA   1350 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103635109 (LOC103635109), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU959991.1	ncRNA:24   CG-GUGGUCUGUCAGGCCACACGGU   1   ||-||||=|||*||||||||||||* targets:701   GCGCACCGGACUGUCCGGUGUGCCC   725 Target Full Sequence	3.0	Zea mays clone 221041 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008663618.2	ncRNA:24   CG-GUGGUCUGUCAGGCCACACGGU   1   ||-||||=|||*||||||||||||* targets:787   GCGCACCGGACUGUCCGGUGUGCCC   811 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103640564 (LOC103640564), mRNA	NA	coding protein	psRNATarget
EZ112673.1	ncRNA:24   CGGUGGUCUGUCAGGCCACACGGU   1   *=||||||||**|||||||||||| targets:62   UUCACCAGACUAUCCGGUGUGCCA   85 Target Full Sequence	2.5	TSA: Zea mays contig48334, mRNA sequence	NA	coding protein	psRNATarget
JB170455.1	ncRNA:24   CGGUGGUCUGUCAGGCCACACGGU   1   |*||||||||*||||||||*|||| targets:9   GGCACCAGACUGUCCGGUGCGCCA   32 Target Full Sequence	2.5	Sequence 8119 from Patent EP2559767	NA	coding protein	psRNATarget
HI409994.1	ncRNA:24   CGGUGGUCUGUCAGGCCACACGGU   1   |*||||||||*||||||||*|||| targets:9   GGCACCAGACUGUCCGGUGCGCCA   32 Target Full Sequence	2.5	Sequence 8119 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242124.1	ncRNA:24   CGGUGGUCUGUCAGGCCACACGGU   1   |*||||||||*||||||||*|||| targets:9   GGCACCAGACUGUCCGGUGCGCCA   32 Target Full Sequence	2.5	Sequence 8119 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001176009.1	ncRNA:24   CGGUGGUCUGUCAGGCCACACGGU   1   **||||||||*||||||||*|||| targets:2292   UGCACCAGACUGUCCGGUGAGCCA   2315 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383353 (LOC100383353), mRNA	NA	coding protein	psRNATarget
BT066975.1	ncRNA:24   CGGUGGUCUGUCAGGCCACACGGU   1   **||||||||*||||||||*|||| targets:2292   UGCACCAGACUGUCCGGUGAGCCA   2315 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0133B08 mRNA, complete cds	NA	coding protein	psRNATarget