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BaseInfo

ncRNA ID	novel_zma_miR8697
Species	Zea mays
Class	miRNA
Genome position	Chr5:143560102-143560261 [-]
Reference genome	RefGen_v4
Source	SRR4237221;SRR4237226;SRR5100255
Length	24
Mature sequence(if miRNA)	137 - ACGGAACAAUUGGAUCUAUACCAU - 160
Stem-loop(if miRNA)	--AC    CAA                        CAA     A   A        GG  CCCAC  G     GACU      G     GGAA   UUGGAUCUAUACCAUUAAAAGAUC   ACUUU GAU UAUACCAU  AC     AU UCAUU    CAUGUG A     ||||   ||||||||||||||||||||||||   ||||| ||| ||||||||  ||     || |||||    ||||||     CCUU   AACCUAGGUAUGGUAAUUUUCUAG   UGAAA CUA GUAUGGUA  UG     UA AGUGA    GUACAC C UUUC    -UA                        UGG     C   G        -A  ----A  G     --AU      C
Stem-loop sequence	ACGGAACAAUUGGAUCUAUACCAUUAAAAGAUCCAAACUUUAGAUAUAUACCAUGGACCCCACAUGUCAUUGACUCAUGUGGACCCACAUGUAAGUGAGAUAGUAAUGGUAUGGAUCCAAAGUGGUGAUCUUUUAAUGGUAUGGAUCCAAAUUUCCCUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ516965.1	ncRNA:24   UACCAUAUCUAGGUUAACAAGGCA   1   |||||||||||||||||||||||| targets:48   AUGGUAUAGAUCCAAUUGUUCCGU   71 Target Full Sequence	0.0	TSA: Zea mays cultivar W22 CL359Contig1.betc, mRNA sequence	NA	coding protein	psRNATarget
EU952279.1	ncRNA:24   UACCAUAUCUAGGUUAACAAGGCA   1   ||||||||||||||||||||||*| targets:734   AUGGUAUAGAUCCAAUUGUUCCUU   757 Target Full Sequence	1.5	Zea mays clone 1275160 mRNA sequence	NA	coding protein	psRNATarget
BT061333.2	ncRNA:24   UACCAUAUCUAGGUUAACAAGGCA   1   ||||||||||||||||||||||*| targets:156   AUGGUAUAGAUCCAAUUGUUCCUU   179 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0136G21 mRNA, complete cds	NA	coding protein	psRNATarget
BT070082.1	ncRNA:24   UACCAUAUCUAGGUUAACAAGGCA   1   ||||||||||||||||||||||*| targets:881   AUGGUAUAGAUCCAAUUGUUCCUU   904 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0008K03 mRNA, complete cds	NA	coding protein	psRNATarget
BT083711.1	ncRNA:24   UACCAUAUCUAGGUUAACAAGGCA   1   ||||||||||||||||||||||*| targets:854   AUGGUAUAGAUCCAAUUGUUCCUU   877 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0030O20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001177092.1	ncRNA:24   UACCAUAUCUAGGUUAACAAGGCA   1   ||||||||||||||||||||||*| targets:854   AUGGUAUAGAUCCAAUUGUUCCUU   877 Target Full Sequence	1.5	Zea mays AUX/IAA transcription factor (AUX17), mRNA	NA	coding protein	psRNATarget
BT018806.1	ncRNA:24   UACCAUAUCUAGGUUAACAAGGCA   1   ||||||||||||||||||||||*| targets:1099   AUGGUAUAGAUCCAAUUGUUCCUU   1122 Target Full Sequence	1.5	Zea mays clone EL01N0529G07.d mRNA sequence	NA	coding protein	psRNATarget
XM_008656647.2	ncRNA:24   UACCAUAUCUAGGUUAACAAGGCA   1   ||||||||||||||||||||||*| targets:609   AUGGUAUAGAUCCAAUUGUUCCUU   632 Target Full Sequence	1.5	PREDICTED: Zea mays Jasmonic acid-amido synthetase JAR1 (pco121700), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020542014.1	ncRNA:24   UACCAUAUCUAGGUUAACAAGGCA   1   ||||||||||||||||||||||*| targets:26   AUGGUAUAGAUCCAAUUGUUCCUU   49 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100277104 (LOC100277104), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ516602.1	ncRNA:24   UACCAUAUCUAGGUUAACAAGGCA   1   ||||||||||||||||||||||** targets:23   AUGGUAUAGAUCCAAUUGUUCCUA   46 Target Full Sequence	2.5	TSA: Zea mays cultivar W22 CL16Contig2.betc, mRNA sequence	NA	coding protein	psRNATarget
EU962525.1	ncRNA:24   UACCAUAUCUAGGUUAACAAGGCA   1   ||||||||||||||||||||||** targets:712   AUGGUAUAGAUCCAAUUGUUCCAC   735 Target Full Sequence	2.5	Zea mays clone 243450 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150698.1	ncRNA:24   UACCAUAUCUAGGUUAACAAGGCA   1   ||||||||||||||||||||||** targets:713   AUGGUAUAGAUCCAAUUGUUCCAC   736 Target Full Sequence	2.5	Zea mays hypothetical protein (pco141453a), mRNA	NA	coding protein	psRNATarget
EU966308.1	ncRNA:24   UACCAUAUCUAGGUUAACAAGGCA   1   ||||||||||||||||||||||** targets:713   AUGGUAUAGAUCCAAUUGUUCCAC   736 Target Full Sequence	2.5	Zea mays clone 293420 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008656158.2	ncRNA:24   UACCAUAUCUAGGUUAACAAGGCA   1   ||||||||||||||||||||||** targets:60   AUGGUAUAGAUCCAAUUGUUCCUA   83 Target Full Sequence	2.5	PREDICTED: Zea mays cell number regulator 5 (CNR05), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_008677625.2	ncRNA:24   UACCAUAUCUAGGUUAACAAGGCA   1   ||||||||||||||||||||||** targets:1539   AUGGUAUAGAUCCAAUUGUUCCUA   1562 Target Full Sequence	2.5	PREDICTED: Zea mays Mitochondrial substrate carrier family protein (si606074b10b), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008677619.2	ncRNA:24   UACCAUAUCUAGGUUAACAAGGCA   1   ||||||||||||||||||||||** targets:1545   AUGGUAUAGAUCCAAUUGUUCCUA   1568 Target Full Sequence	2.5	PREDICTED: Zea mays Mitochondrial substrate carrier family protein (si606074b10b), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU957674.1	ncRNA:24   UACCAUAUCUAGGUUAACAAGGCA   1   ||||||||||||||||||||||** targets:1568   AUGGUAUAGAUCCAAUUGUUCCAA   1591 Target Full Sequence	2.5	Zea mays clone 1602824 mRNA sequence	NA	coding protein	psRNATarget
EZ088471.1	ncRNA:19   UAUCUAGGUUAACAAGGCA   1   |||||||||||||||||*| targets:1   AUAGAUCCAAUUGUUCCUU   19 Target Full Sequence	1.5	TSA: Zea mays contig24117, mRNA sequence	NA	coding protein	psRNATarget
EU953692.1	ncRNA:19   UAUCUAGGUUAACAAGGCA   1   |||||||||||||||||** targets:1   AUAGAUCCAAUUGUUCCAA   19 Target Full Sequence	2.5	Zea mays clone 1444158 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001279382.1	ncRNA:19   UAUCUAGGUUAACAAGGCA   1   |||||||||||||||||** targets:1   AUAGAUCCAAUUGUUCCAA   19 Target Full Sequence	2.5	Zea mays uncharacterized LOC101202694 (LOC101202694), mRNA	NA	coding protein	psRNATarget