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BaseInfo

ncRNA ID	novel_zma_miR8672
Species	Zea mays
Class	miRNA
Genome position	Chr5:155182241-155182384 [+]
Reference genome	RefGen_v4
Source	SRR4237221;SRR4237225;SRR4237226;SRR4237227
Length	24
Mature sequence(if miRNA)	121 - AUUAGCUAGGGUGUUUGAAUGUCU - 144
Stem-loop(if miRNA)	--     UG     A      CU    -A    ---       AAAAUUUAAUAGUAGCA      AGCUAACAAAUAGCU   AUGUU  AAUAC CUAGCU  AAUA  UUAG   UUAGCUA                 UUAGCU               A   |||||  ||||| ||||||  ||||  ||||   |||||||                 ||||||               G   UGUAA  UUGUG GAUCGA  UUAU  AAUC   AAUCGAU                 AUCAUU               U UC     GU     G      --    AA    UAU       -------------AAAA      UAAUCGAUGAUCAAU
Stem-loop sequence	AUGUUUGAAUACACUAGCUCUAAUAAUUAGUUAGCUAAAAAUUUAAUAGUAGCAUUAGCUAGCUAACAAAUAGCUAGUUAACUAGUAGCUAAUUUACUAAAAAUAGCUAAUAUCUAAAAUAUUAGCUAGGGUGUUUGAAUGUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT085123.2	ncRNA:24   UCUGUAAGUUUGUGGGAUCGAUUA   1   |||||||||||||=|||||||||| targets:1133   AGACAUUCAAACAUCCUAGCUAAU   1156 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0296D08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196102.1	ncRNA:24   UCUGUAAGUUUGUGGGAUCGAUUA   1   |||||||||||||=|||||||||| targets:1133   AGACAUUCAAACAUCCUAGCUAAU   1156 Target Full Sequence	1.5	Zea mays uncharacterized LOC100501358 (LOC100501358), mRNA	NA	coding protein	psRNATarget
XM_020545045.1	ncRNA:24   UCUGUAAGUUUGUGGGAUCGAUUA   1   ||||||*||||||||||||||||| targets:2001   AGACAUCCAAACACCCUAGCUAAU   2024 Target Full Sequence	1.0	PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020548642.1	ncRNA:24   UCUGUAAGUUUGUGGGAUCGAUUA   1   |||*|||||||||||||||||||| targets:2150   AGAGAUUCAAACACCCUAGCUAAU   2173 Target Full Sequence	0.0	PREDICTED: Zea mays ubiquitin-like-specific protease ESD4 (LOC103647934), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008669572.2	ncRNA:24   UCUGUAAGUUUGUGGGAUCGAUUA   1   |||*|||||||||||||||||||| targets:2114   AGAGAUUCAAACACCCUAGCUAAU   2137 Target Full Sequence	0.0	PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT067503.1	ncRNA:24   UCUGUAAGUUUGUGGGAUCGAUUA   1   ||||||*||||||||||||||||| targets:3658   AGACAUCCAAACACCCUAGCUAAU   3681 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0066C23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176181.1	ncRNA:24   UCUGUAAGUUUGUGGGAUCGAUUA   1   ||||||*||||||||||||||||| targets:3658   AGACAUCCAAACACCCUAGCUAAU   3681 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383533 (LOC100383533), mRNA	NA	coding protein	psRNATarget
XM_008669570.2	ncRNA:24   UCUGUAAGUUUGUGGGAUCGAUUA   1   |||*|||||||||||||||||||| targets:1904   AGAGAUUCAAACACCCUAGCUAAU   1927 Target Full Sequence	0.0	PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020547655.1	ncRNA:24   UCUGUAAGUUUGUGGGAUCGAUUA   1   |||*|||||||||||||||||||| targets:1860   AGAGAUUCAAACACCCUAGCUAAU   1883 Target Full Sequence	0.0	PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020542504.1	ncRNA:24   UCUGUAAGUUUGUGGGAUCGAUUA   1   ||||||*||||||||||||||||| targets:2389   AGACAUCCAAACACCCUAGCUAAU   2412 Target Full Sequence	1.0	PREDICTED: Zea mays B3 domain-containing protein Os03g0120900 (LOC103636243), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001152524.1	ncRNA:24   UCUGUAAGUUUGUGGGAUCGAUUA   1   |||*|||||||||||||||||||| targets:2179   AGAGAUUCAAACACCCUAGCUAAU   2202 Target Full Sequence	0.0	Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), mRNA	NA	coding protein	psRNATarget
BT063004.1	ncRNA:24   UCUGUAAGUUUGUGGGAUCGAUUA   1   |||*|||||||||||||||||||| targets:2179   AGAGAUUCAAACACCCUAGCUAAU   2202 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0016A10 mRNA, complete cds	NA	coding protein	psRNATarget
HI402970.1	ncRNA:24   UCUGUAAGUUUGUGGGAUCGAUUA   1   ||||||*||||||||||||||||| targets:57   AGACAUCCAAACACCCUAGCUAAU   80 Target Full Sequence	1.0	Sequence 1095 from Patent EP2074227	NA	coding protein	psRNATarget
JB163431.1	ncRNA:24   UCUGUAAGUUUGUGGGAUCGAUUA   1   ||||||*||||||||||||||||| targets:57   AGACAUCCAAACACCCUAGCUAAU   80 Target Full Sequence	1.0	Sequence 1095 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235100.1	ncRNA:24   UCUGUAAGUUUGUGGGAUCGAUUA   1   ||||||*||||||||||||||||| targets:57   AGACAUCCAAACACCCUAGCUAAU   80 Target Full Sequence	1.0	Sequence 1095 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235160.1	ncRNA:24   UCUGUAAGUUUGUGGGAUCGAUUA   1   ||||||*||||||||=|||||||| targets:60   AGACAUCCAAACACCUUAGCUAAU   83 Target Full Sequence	2.5	Sequence 1155 from Patent EP2985353	NA	coding protein	psRNATarget
JB163491.1	ncRNA:24   UCUGUAAGUUUGUGGGAUCGAUUA   1   ||||||*||||||||=|||||||| targets:60   AGACAUCCAAACACCUUAGCUAAU   83 Target Full Sequence	2.5	Sequence 1155 from Patent EP2559767	NA	coding protein	psRNATarget
HI403030.1	ncRNA:24   UCUGUAAGUUUGUGGGAUCGAUUA   1   ||||||*||||||||=|||||||| targets:60   AGACAUCCAAACACCUUAGCUAAU   83 Target Full Sequence	2.5	Sequence 1155 from Patent EP2074227	NA	coding protein	psRNATarget
HI408592.1	ncRNA:24   UCUGUAAGUUUGUGGGAUCGAUUA   1   ||||||*||||||||=|||||||| targets:54   AGACAUCCAAACACCUUAGCUAAU   77 Target Full Sequence	2.5	Sequence 6717 from Patent EP2074227	NA	coding protein	psRNATarget
LQ240722.1	ncRNA:24   UCUGUAAGUUUGUGGGAUCGAUUA   1   ||||||*||||||||=|||||||| targets:54   AGACAUCCAAACACCUUAGCUAAU   77 Target Full Sequence	2.5	Sequence 6717 from Patent EP2985353	NA	coding protein	psRNATarget
JB169053.1	ncRNA:24   UCUGUAAGUUUGUGGGAUCGAUUA   1   ||||||*||||||||=|||||||| targets:54   AGACAUCCAAACACCUUAGCUAAU   77 Target Full Sequence	2.5	Sequence 6717 from Patent EP2559767	NA	coding protein	psRNATarget
EZ086734.1	ncRNA:24   UCUGUAAGUUUGUGGGAUCGAUUA   1   |||=||*||||||||||||||||| targets:15   AGAUAUACAAACACCCUAGCUAAU   38 Target Full Sequence	1.0	TSA: Zea mays contig22380, mRNA sequence	NA	coding protein	psRNATarget
BT066299.1	ncRNA:24   UCUGUAAGUUUGUGGGAUCGAUUA   1   =|||||*|||||||=||||||||| targets:1242   GGACAUCCAAACACUCUAGCUAAU   1265 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0189M13 mRNA, complete cds	NA	coding protein	psRNATarget
JB163468.1	ncRNA:24   UCUGUAAGUUUGUGGGAUCGAUUA   1   ||||||*||||||||*|||||||| targets:56   AGACAUCCAAACACCAUAGCUAAU   79 Target Full Sequence	2.5	Sequence 1132 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235137.1	ncRNA:24   UCUGUAAGUUUGUGGGAUCGAUUA   1   ||||||*||||||||*|||||||| targets:56   AGACAUCCAAACACCAUAGCUAAU   79 Target Full Sequence	2.5	Sequence 1132 from Patent EP2985353	NA	coding protein	psRNATarget
HI403007.1	ncRNA:24   UCUGUAAGUUUGUGGGAUCGAUUA   1   ||||||*||||||||*|||||||| targets:56   AGACAUCCAAACACCAUAGCUAAU   79 Target Full Sequence	2.5	Sequence 1132 from Patent EP2074227	NA	coding protein	psRNATarget