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BaseInfo

ncRNA ID	novel_zma_miR8665
Species	Zea mays
Class	miRNA
Genome position	Chr4:5502607-5502842 [+]
Reference genome	RefGen_v4
Source	SRR4237221
Length	22
Mature sequence(if miRNA)	1 - AACCAUAAAGUUUGUAGCACGG - 22
Stem-loop(if miRNA)	--                      U  A      -   C      A   U      A    U  C        A     G        U              AU       A      UG   AACCAUAAAGUUUGUAGCACGG UG CAAGGU AAA UUAUUU AAC CAUUAC UACA UU GUAUUAUA UAUUA UUUUUUAU AUAAAUCGUUUAUU  UUUUUUA UGACAU  A   |||||||||||||||||||||| || |||||| ||| |||||| ||| |||||| |||| || |||||||| ||||| |||||||| ||||||||||||||  ||||||| ||||||   UUGGUAUUUCGAACGUCGUGCC AC GUUUCA UUU AAUAAA UUG GUAAUG AUGU AA CAUAAUAU AUAAU GAAAAAUA UAUUUAGCAAAUAA  AAAAAGU GCUGUG  C GC                      C  -      A   U      C   C      A    U  A        A     -        U              --       -      UA
Stem-loop sequence	AACCAUAAAGUUUGUAGCACGGUUGACAAGGUAAACUUAUUUAAACUCAUUACAUACAUUUCGUAUUAUAAUAUUAGUUUUUUAUUAUAAAUCGUUUAUUAUUUUUUUAAUGACAUUGACAUGUGUCGUGAAAAAAAUAAACGAUUUAUUAUAAAAAGUAAUAAUAUAAUACAAAUUGUAAGUAAUGCGUUCAAAUAAUUUUAACUUUGCACCCGUGCUGCAAGCUUUAUGGUUCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235263.1	ncRNA:22   GGCACGAUGUUUGAAAUACCAA   1   |||||||||||||||||||||| targets:229   CCGUGCUACAAACUUUAUGGUU   250 Target Full Sequence	0.0	Sequence 1258 from Patent EP2985353	NA	coding protein	psRNATarget
JB163594.1	ncRNA:22   GGCACGAUGUUUGAAAUACCAA   1   |||||||||||||||||||||| targets:229   CCGUGCUACAAACUUUAUGGUU   250 Target Full Sequence	0.0	Sequence 1258 from Patent EP2559767	NA	coding protein	psRNATarget
HI403133.1	ncRNA:22   GGCACGAUGUUUGAAAUACCAA   1   |||||||||||||||||||||| targets:229   CCGUGCUACAAACUUUAUGGUU   250 Target Full Sequence	0.0	Sequence 1258 from Patent EP2074227	NA	coding protein	psRNATarget
JB163423.1	ncRNA:22   GGCACGAUGUUUGAAAUACCAA   1   |||||||=|||=|||||||||| targets:227   CCGUGCUGCAAGCUUUAUGGUU   248 Target Full Sequence	2.5	Sequence 1087 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235092.1	ncRNA:22   GGCACGAUGUUUGAAAUACCAA   1   |||||||=|||=|||||||||| targets:227   CCGUGCUGCAAGCUUUAUGGUU   248 Target Full Sequence	2.5	Sequence 1087 from Patent EP2985353	NA	coding protein	psRNATarget
HI402962.1	ncRNA:22   GGCACGAUGUUUGAAAUACCAA   1   |||||||=|||=|||||||||| targets:227   CCGUGCUGCAAGCUUUAUGGUU   248 Target Full Sequence	2.5	Sequence 1087 from Patent EP2074227	NA	coding protein	psRNATarget
EU945721.1	ncRNA:22   GGCACGAUGUUUGAAAUACCAA   1   ***|||*||||||||||||||| targets:613   AGAUGCAACAAACUUUAUGGUU   634 Target Full Sequence	1.0	Zea mays clone 283467 mRNA sequence	NA	coding protein	psRNATarget
XM_020547061.1	ncRNA:22   GGCACGAUGUUUGAAAUACCAA   1   ***|||*||||||||||||||| targets:1523   AGAUGCAACAAACUUUAUGGUU   1544 Target Full Sequence	1.0	PREDICTED: Zea mays rhodanese-like domain-containing protein 8, chloroplastic (LOC103644349), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008667567.2	ncRNA:22   GGCACGAUGUUUGAAAUACCAA   1   ***|||*||||||||||||||| targets:1533   AGAUGCAACAAACUUUAUGGUU   1554 Target Full Sequence	1.0	PREDICTED: Zea mays rhodanese-like domain-containing protein 8, chloroplastic (LOC103644349), transcript variant X1, mRNA	NA	coding protein	psRNATarget