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BaseInfo

ncRNA ID	novel_zma_miR8660
Species	Zea mays
Class	miRNA
Genome position	Chr8:23715114-23715262 [-]
Reference genome	RefGen_v4
Source	SRR4237220;SRR4237221
Length	24
Mature sequence(if miRNA)	1 - AUUAGUUCCUAUAAACCAAACACC - 24
Stem-loop(if miRNA)	--      A   C    U      U           -------      A     C      UACA     AU    U   UGUUUG UUU UAGG ACUAAU UUUAGUCCUUA       CAUUUU UUCCA UUUAGU    AAAUU  UAAA A   |||||| ||| |||| |||||| |||||||||||       |||||| ||||| ||||||    |||||  ||||   ACAAAC AAA AUCC UGAUUA AAAUCAGGGAU       GUAAAA AAGGU AAAUCA    UUUAA  GUUU U CC      C   U    U      C           CAGGGAA      C     A      UAUA     CU    A
Stem-loop sequence	UGUUUGAUUUCUAGGUACUAAUUUUUAGUCCUUACAUUUUAUUCCACUUUAGUUACAAAAUUAUUAAAUAUAUUUGUCAAUUUAUAUACUAAAAUGGAACAAAAUGAAGGGACUAGGGACUAAACAUUAGUUCCUAUAAACCAAACACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT083492.2	ncRNA:24   CCACAAACCAAAUAUCCUUGAUUA   1   |||||||||||||||||=|||||| targets:648   GGUGUUUGGUUUAUAGGGACUAAU   671 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0003B18 mRNA, complete cds	NA	coding protein	psRNATarget
EU957896.1	ncRNA:24   CCACAAACCAAAUAUCCUUGAUUA   1   |||||||||||||||||=|||||| targets:1242   GGUGUUUGGUUUAUAGGGACUAAU   1265 Target Full Sequence	1.5	Zea mays clone 1630391 mRNA sequence	NA	coding protein	psRNATarget
EU965238.1	ncRNA:24   CCACAAACCAAAUAUCCUUGAUUA   1   |||||||||||||||||=|||||| targets:1163   GGUGUUUGGUUUAUAGGGACUAAU   1186 Target Full Sequence	1.5	Zea mays clone 284715 protein COQ10 A mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156492.1	ncRNA:24   CCACAAACCAAAUAUCCUUGAUUA   1   |||||||||||||||||=|||||| targets:1163   GGUGUUUGGUUUAUAGGGACUAAU   1186 Target Full Sequence	1.5	Zea mays protein COQ10 A (LOC100283591), mRNA	NA	coding protein	psRNATarget
EZ061563.1	ncRNA:24   CCACAAACCAAAUAUCCUUGAUUA   1   |||||||||||||||||=|||||| targets:319   GGUGUUUGGUUUAUAGGGACUAAU   342 Target Full Sequence	1.5	TSA: Zea mays contig62685, mRNA sequence	NA	coding protein	psRNATarget
EU967664.1	ncRNA:24   CCACAAACCAAAUAUCCUUGAUUA   1   |||||||||||||||||=|||||* targets:1098   GGUGUUUGGUUUAUAGGGACUAAA   1121 Target Full Sequence	2.5	Zea mays clone 305169 NADH-cytochrome b5 reductase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001112602.2	ncRNA:24   CCACAAACCAAAUAUCCUUGAUUA   1   |||||||||||||||||=|||||* targets:1098   GGUGUUUGGUUUAUAGGGACUAAA   1121 Target Full Sequence	2.5	Zea mays ferric-chelate reductase (NADH)2 (fcr2), mRNA	NA	coding protein	psRNATarget
XM_008680551.2	ncRNA:24   CCACAAACCAAAUAUCCUUGAUUA   1   *||||||||||||||||=|||||| targets:810   AGUGUUUGGUUUAUAGGGACUAAU   833 Target Full Sequence	1.5	PREDICTED: Zea mays Plant-specific domain TIGR01589 family protein (pco120805), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB163455.1	ncRNA:24   CCACAAACCAAAUAUCCUUGAUUA   1   |||||||||||||||||=|||||* targets:1   GGUGUUUGGUUUAUAGGGACUAAA   24 Target Full Sequence	2.5	Sequence 1119 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235124.1	ncRNA:24   CCACAAACCAAAUAUCCUUGAUUA   1   |||||||||||||||||=|||||* targets:1   GGUGUUUGGUUUAUAGGGACUAAA   24 Target Full Sequence	2.5	Sequence 1119 from Patent EP2985353	NA	coding protein	psRNATarget
HI402994.1	ncRNA:24   CCACAAACCAAAUAUCCUUGAUUA   1   |||||||||||||||||=|||||* targets:1   GGUGUUUGGUUUAUAGGGACUAAA   24 Target Full Sequence	2.5	Sequence 1119 from Patent EP2074227	NA	coding protein	psRNATarget
EU943837.1	ncRNA:24   CCACAAACCAAAUAUCCUUGAUUA   1   |||||||||||||||||*|||||| targets:393   GGUGUUUGGUUUAUAGGUACUAAU   416 Target Full Sequence	1.5	Zea mays clone 1689635 mRNA sequence	NA	coding protein	psRNATarget
XM_008675552.2	ncRNA:24   CC-ACAAACCAAAUAUCCUUGAUUA   1   ||-|||||||||||||||=|||||| targets:1293   GGAUGUUUGGUUUAUAGGGACUAAU   1317 Target Full Sequence	1.5	PREDICTED: Zea mays LOB domain-containing protein 40 (LOC103649851), mRNA	NA	coding protein	psRNATarget