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BaseInfo

ncRNA ID novel_zma_miR8646
Species Zea mays
Class miRNA
Genome position Chr7:161820400-161820455 [+]
Reference genome RefGen_v4
Source SRR4237220
Length 24
Mature sequence(if miRNA) 1 - AAAUUGAUUUCCACUGGCGGUUGA - 24
Stem-loop(if miRNA) --           C          GAGU
  AAAUUGAUUUC ACUGGCGGUU    U
  ||||||||||| ||||||||||
  UUUAGCUAAAG UGACCGCCAA    A
CC           A          AAGA
Stem-loop sequence AAAUUGAUUUCCACUGGCGGUUGAGUUAAGAAAACCGCCAGUAGAAAUCGAUUUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001150001.1
ncRNA:24   AGUUGGCGGUCACCUUUAGUUAAA   1
  **=||||||||||*||||||||||
targets:618   AGGACCGCCAGUGAAAAUCAAUUU   641

1.5 Zea mays uncharacterized LOC100276144 (LOC100276144), mRNA NA coding protein psRNATarget
EU960305.1
ncRNA:24   AGUUGGCGGUCACCUUUAGUUAAA   1
  **=||||||||||*||||||||||
targets:618   AGGACCGCCAGUGAAAAUCAAUUU   641

1.5 Zea mays clone 223391 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EZ054571.1
ncRNA:24   AGUUGGCGGUCACCUUUAGUUAAA   1
  |*=|=|*=|||||||||||||||*
targets:175   UAGAUCCUCAGUGGAAAUCAAUUA   198

3.0 TSA: Zea mays contig55693, mRNA sequence NA coding protein psRNATarget
XM_008648576.2
ncRNA:24   AGUUGGCGGUCACCUUUAGUUAAA   1
  |*=|=|*=|||||||||||||||*
targets:1795   UAGAUCCUCAGUGGAAAUCAAUUA   1818

3.0 PREDICTED: Zea mays protein kinase domain superfamily protein (LOC100501094), transcript variant X1, mRNA NA coding protein psRNATarget
BT084504.1
ncRNA:24   AGUUGGCGGUCACCUUUAGUUAAA   1
  |*=|=|*=|||||||||||||||*
targets:2501   UAGAUCCUCAGUGGAAAUCAAUUA   2524

3.0 Zea mays full-length cDNA clone ZM_BFb0124H10 mRNA, complete cds NA coding protein psRNATarget
NM_001195915.1
ncRNA:24   AGUUGGCGGUCACCUUUAGUUAAA   1
  |*=|=|*=|||||||||||||||*
targets:2501   UAGAUCCUCAGUGGAAAUCAAUUA   2524

3.0 Zea mays protein kinase domain superfamily protein (LOC100501094), mRNA NA coding protein psRNATarget
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