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BaseInfo

ncRNA ID	novel_zma_miR8630
Species	Zea mays
Class	miRNA
Genome position	Chr6:173068644-173068705 [+]
Reference genome	RefGen_v4
Source	SRR4237220
Length	24
Mature sequence(if miRNA)	39 - GAGAAUCUGGCUGUAGGAAGAAUC - 62
Stem-loop(if miRNA)	-U       GAC     --U    GAAAA    G   UUUUUCU   CAGCU   UUCU     UCUA C   |||||||   |||||   ||||     ||||   AAGAAGG   GUCGG   AAGA     AGGU U CU       -AU     UCU    ----G    A
Stem-loop sequence	UUUUUUCUGACCAGCUUUUCUGAAAAUCUAGCUAUGGAGAGAAUCUGGCUGUAGGAAGAAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT087362.1	ncRNA:24   CUAAGAAGGAUGUCGGUCUAAGAG   1   |||||||||*|||||||||||=|| targets:1200   GAUUCUUCCCACAGCCAGAUUUUC   1223 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0054C12 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001177007.2	ncRNA:24   CUAAGAAGGAUGUCGGUCUAAGAG   1   |||||||||*|||||||||||=|| targets:2427   GAUUCUUCCCACAGCCAGAUUUUC   2450 Target Full Sequence	2.5	Zea mays calcium dependent protein kinase4 (IDP2562), mRNA	NA	coding protein	psRNATarget
FJ805744.1	ncRNA:24   CUAAGAAGGAUGUCGGUCUAAGAG   1   |||||||||*|||||||||||=|| targets:2427   GAUUCUUCCCACAGCCAGAUUUUC   2450 Target Full Sequence	2.5	Zea mays CDPK protein (CK1) mRNA, complete cds	NA	coding protein	psRNATarget
BT033622.1	ncRNA:24   CUAAGAAGGAUGUCGGUCUAAGAG   1   *||||||||*||||=||||||||| targets:1387   AAUUCUUCCCACAGUCAGAUUCUC   1410 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0117M03 mRNA, complete cds	NA	coding protein	psRNATarget
EU963449.1	ncRNA:24   CUAAGAAGGAUGUCGGUCUAAGAG   1   ||||||*||||||*|||||||||| targets:707   GAUUCUCCCUACAACCAGAUUCUC   730 Target Full Sequence	2.5	Zea mays clone 262668 mRNA sequence	NA	coding protein	psRNATarget
XM_020545993.1	ncRNA:24   CUAAGAAGGAUGUCGGUCUAAGAG   1   ||||||*||*|||||||||||||| targets:192   GAUUCUCCCCACAGCCAGAUUCUC   215 Target Full Sequence	2.0	PREDICTED: Zea mays short-chain dehydrogenase TIC 32, chloroplastic (LOC103641540), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008664880.2	ncRNA:24   CUAAGAAGGAUGUCGGUCUAAGAG   1   ||||||*||*|||||||||||||| targets:442   GAUUCUCCCCACAGCCAGAUUCUC   465 Target Full Sequence	2.0	PREDICTED: Zea mays short-chain dehydrogenase TIC 32, chloroplastic (LOC103641540), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008664881.2	ncRNA:24   CUAAGAAGGAUGUCGGUCUAAGAG   1   ||||||*||*|||||||||||||| targets:446   GAUUCUCCCCACAGCCAGAUUCUC   469 Target Full Sequence	2.0	PREDICTED: Zea mays short-chain dehydrogenase TIC 32, chloroplastic (LOC103641540), transcript variant X2, mRNA	NA	coding protein	psRNATarget