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BaseInfo

ncRNA ID novel_zma_miR8623
Species Zea mays
Class miRNA
Genome position Chr6:139007785-139007953 [+]
Reference genome RefGen_v4
Source SRR4237220;SRR4237221
Length 24
Mature sequence(if miRNA) 146 - AUUAGUCUCUAUAAACCAAACACC - 169
Stem-loop(if miRNA) --UA        C            U   AC C           --  UCUUUCAGUCUCUAAAUCACCAAACAUAGAGACUAAA
    UUUGGUUU UAGAGACUAAUU UUA  C UUCUAUUUUAG  CU                                     A
    |||||||| |||||||||||| |||  | |||||||||||  ||                                     U
    AAACCAAA AUCUCUGAUUAA AAU  G GAGAUAAAAUC  AU                                     A
CCAC        U            U   CA A           AU  UUAACAGUUUGUAUCCAUGAUUUUCUACUUAAUAGAG
Stem-loop sequence UAUUUGGUUUCUAGAGACUAAUUUUUAACCCUUCUAUUUUAGCUUCUUUCAGUCUCUAAAUCACCAAACAUAGAGACUAAAAUAGAGAUAAUUCAUCUUUUAGUACCUAUGUUUGACAAUUUAUACUAAAAUAGAGAGACUAAUAAUUAGUCUCUAUAAACCAAACACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AY104317.1
ncRNA:24   CCACAAACCAAAUAUCUCUGAUUA   1
  ||||||||||||||||||||||||
targets:1595   GGUGUUUGGUUUAUAGAGACUAAU   1618

0.0 Zea mays PCO132144 mRNA sequence NA coding protein psRNATarget
BT083492.2
ncRNA:24   CCACAAACCAAAUAUCUCUGAUUA   1
  ||||||||||||||||=|||||||
targets:648   GGUGUUUGGUUUAUAGGGACUAAU   671

1.5 Zea mays full-length cDNA clone ZM_BFb0003B18 mRNA, complete cds NA coding protein psRNATarget
EU957896.1
ncRNA:24   CCACAAACCAAAUAUCUCUGAUUA   1
  ||||||||||||||||=|||||||
targets:1242   GGUGUUUGGUUUAUAGGGACUAAU   1265

1.5 Zea mays clone 1630391 mRNA sequence NA coding protein psRNATarget
NM_001156492.1
ncRNA:24   CCACAAACCAAAUAUCUCUGAUUA   1
  ||||||||||||||||=|||||||
targets:1163   GGUGUUUGGUUUAUAGGGACUAAU   1186

1.5 Zea mays protein COQ10 A (LOC100283591), mRNA NA coding protein psRNATarget
EU965238.1
ncRNA:24   CCACAAACCAAAUAUCUCUGAUUA   1
  ||||||||||||||||=|||||||
targets:1163   GGUGUUUGGUUUAUAGGGACUAAU   1186

1.5 Zea mays clone 284715 protein COQ10 A mRNA, complete cds NA coding protein psRNATarget
EZ061563.1
ncRNA:24   CCACAAACCAAAUAUCUCUGAUUA   1
  ||||||||||||||||=|||||||
targets:319   GGUGUUUGGUUUAUAGGGACUAAU   342

1.5 TSA: Zea mays contig62685, mRNA sequence NA coding protein psRNATarget
LQ238744.1
ncRNA:24   CCACAAACCAAAUAUCUCUGAUUA   1
  |||||||||||||||||||||||*
targets:129   GGUGUUUGGUUUAUAGAGACUAAA   152

1.0 Sequence 4739 from Patent EP2985353 NA coding protein psRNATarget
HI406614.1
ncRNA:24   CCACAAACCAAAUAUCUCUGAUUA   1
  |||||||||||||||||||||||*
targets:129   GGUGUUUGGUUUAUAGAGACUAAA   152

1.0 Sequence 4739 from Patent EP2074227 NA coding protein psRNATarget
JB167075.1
ncRNA:24   CCACAAACCAAAUAUCUCUGAUUA   1
  |||||||||||||||||||||||*
targets:129   GGUGUUUGGUUUAUAGAGACUAAA   152

1.0 Sequence 4739 from Patent EP2559767 NA coding protein psRNATarget
EU967664.1
ncRNA:24   CCACAAACCAAAUAUCUCUGAUUA   1
  ||||||||||||||||=||||||*
targets:1098   GGUGUUUGGUUUAUAGGGACUAAA   1121

2.5 Zea mays clone 305169 NADH-cytochrome b5 reductase mRNA, complete cds NA coding protein psRNATarget
NM_001112602.2
ncRNA:24   CCACAAACCAAAUAUCUCUGAUUA   1
  ||||||||||||||||=||||||*
targets:1098   GGUGUUUGGUUUAUAGGGACUAAA   1121

2.5 Zea mays ferric-chelate reductase (NADH)2 (fcr2), mRNA NA coding protein psRNATarget
XM_008680551.2
ncRNA:24   CCACAAACCAAAUAUCUCUGAUUA   1
  *|||||||||||||||=|||||||
targets:810   AGUGUUUGGUUUAUAGGGACUAAU   833

1.5 PREDICTED: Zea mays Plant-specific domain TIGR01589 family protein (pco120805), transcript variant X1, mRNA NA coding protein psRNATarget
JB163455.1
ncRNA:24   CCACAAACCAAAUAUCUCUGAUUA   1
  ||||||||||||||||=||||||*
targets:1   GGUGUUUGGUUUAUAGGGACUAAA   24

2.5 Sequence 1119 from Patent EP2559767 NA coding protein psRNATarget
LQ235124.1
ncRNA:24   CCACAAACCAAAUAUCUCUGAUUA   1
  ||||||||||||||||=||||||*
targets:1   GGUGUUUGGUUUAUAGGGACUAAA   24

2.5 Sequence 1119 from Patent EP2985353 NA coding protein psRNATarget
HI402994.1
ncRNA:24   CCACAAACCAAAUAUCUCUGAUUA   1
  ||||||||||||||||=||||||*
targets:1   GGUGUUUGGUUUAUAGGGACUAAA   24

2.5 Sequence 1119 from Patent EP2074227 NA coding protein psRNATarget
EU956677.1
ncRNA:24   CCACAAACCAAAUAUCUCUGAUUA   1
  ||||||||||||*|||||||||||
targets:2011   GGUGUUUGGUUUCUAGAGACUAAU   2034

1.5 Zea mays clone 1570443 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_008675552.2
ncRNA:24   CC-ACAAACCAAAUAUCUCUGAUUA   1
  ||-||||||||||||||=|||||||
targets:1293   GGAUGUUUGGUUUAUAGGGACUAAU   1317

1.5 PREDICTED: Zea mays LOB domain-containing protein 40 (LOC103649851), mRNA NA coding protein psRNATarget
XM_020550478.1
ncRNA:24   CCACAAACCAAAUAUCUCUGAUUA   1
  *||||||*||||||||||||||||
targets:2622   CGUGUUUAGUUUAUAGAGACUAAU   2645

1.0 PREDICTED: Zea mays uncharacterized LOC103651221 (LOC103651221), mRNA NA coding protein psRNATarget
EU952196.1
ncRNA:24   CC--ACAAACCAAAUAUCUCUGAUUA   1
  ||--|||||||||||||*||||||||
targets:2281   GGAUUGUUUGGUUUAUAAAGACUAAU   2306

1.5 Zea mays clone 1219847 phenylalanyl-tRNA synthetase beta chain mRNA, complete cds NA coding protein psRNATarget
NM_001153432.1
ncRNA:24   CC--ACAAACCAAAUAUCUCUGAUUA   1
  ||--|||||||||||||*||||||||
targets:2281   GGAUUGUUUGGUUUAUAAAGACUAAU   2306

1.5 Zea mays uncharacterized LOC100280512 (pco131239), mRNA NA coding protein psRNATarget
XM_008649544.2
ncRNA:24   CC--ACAAACCAAAUAUCUCUGAUUA   1
  ||--|||||||||||||*||||||||
targets:2220   GGAUUGUUUGGUUUAUAAAGACUAAU   2245

1.5 PREDICTED: Zea mays uncharacterized LOC100280512 (pco131239), transcript variant X1, mRNA NA coding protein psRNATarget
AY108056.1
ncRNA:24   CC--ACAAACCAAAUAUCUCUGAUUA   1
  ||--|||||||||||||*||||||||
targets:1562   GGAUUGUUUGGUUUAUAAAGACUAAU   1587

1.5 Zea mays PCO131239 mRNA sequence NA coding protein psRNATarget
NM_001111805.2
ncRNA:24   CC-ACAAACCAAAUAUCUCUGAUUA   1
  ||-|||||*||||*|||||||||||
targets:1478   GGAUGUUUUGUUUCUAGAGACUAAU   1502

2.5 Zea mays uncharacterized LOC542191 (TIDP2941), mRNA NA coding protein psRNATarget
AY104678.1
ncRNA:24   CC-ACAAACCAAAUAUCUCUGAUUA   1
  ||-|||||*||||*|||||||||||
targets:1467   GGAUGUUUUGUUUCUAGAGACUAAU   1491

2.5 Zea mays PCO081661 mRNA sequence NA coding protein psRNATarget
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