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BaseInfo

ncRNA ID novel_zma_miR8622
Species Zea mays
Class miRNA
Genome position Chr6:128049159-128049282 [+]
Reference genome RefGen_v4
Source SRR4237220
Length 21
Mature sequence(if miRNA) 104 - UCACUUGGUCCCAAACAAGCC - 124
Stem-loop(if miRNA) --           G         CA                            AC      A
  CUUGUUUGGGA UAGGUGGAA  AAGAGAAUUGAGGGGGCUAUAAUCCCUU  UAUUCA U
  ||||||||||| |||||||||  ||||||||||||||||||||||||||||  ||||||
  GAACAAACCCU GUUCACUUU  UUCUCUUAACUCCCCCGAUAUUAGGGAA  AUAAGU U
CC           G         AC                            CA      U
Stem-loop sequence CUUGUUUGGGAGUAGGUGGAACAAAGAGAAUUGAGGGGGCUAUAAUCCCUUACUAUUCAAUUUUGAAUAACAAGGGAUUAUAGCCCCCUCAAUUCUCUUCAUUUCACUUGGUCCCAAACAAGCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI406069.1
ncRNA:21   CCGAACAAACCCUGGUUCACU   1
  |||||||||||||*|||||||
targets:4   GGCUUGUUUGGGAGCAAGUGA   24

1.5 Sequence 4194 from Patent EP2074227 NA coding protein psRNATarget
LQ238199.1
ncRNA:21   CCGAACAAACCCUGGUUCACU   1
  |||||||||||||*|||||||
targets:4   GGCUUGUUUGGGAGCAAGUGA   24

1.5 Sequence 4194 from Patent EP2985353 NA coding protein psRNATarget
JB166530.1
ncRNA:21   CCGAACAAACCCUGGUUCACU   1
  |||||||||||||*|||||||
targets:4   GGCUUGUUUGGGAGCAAGUGA   24

1.5 Sequence 4194 from Patent EP2559767 NA coding protein psRNATarget
BT036654.1
ncRNA:21   CCGAACAAACCCUGGUUCACU   1
  |||||||||||||*|||||||
targets:957   GGCUUGUUUGGGAGCAAGUGA   977

1.5 Zea mays full-length cDNA clone ZM_BFb0128D05 mRNA, complete cds NA coding protein psRNATarget
NM_001349849.1
ncRNA:21   CCGAACAAACCCUGGUUCACU   1
  |||||||||||||*|||||||
targets:790   GGCUUGUUUGGGAGCAAGUGA   810

1.5 Zea mays uncharacterized LOC100194187 (LOC100194187), mRNA NA coding protein psRNATarget
EU952717.1
ncRNA:21   CCGAACAAACCCUGGUUCACU   1
  |||||||||||||*|||||||
targets:790   GGCUUGUUUGGGAGCAAGUGA   810

1.5 Zea mays clone 1287070 zinc finger protein mRNA, complete cds NA coding protein psRNATarget
XM_020540546.1
ncRNA:21   CCGAACAAACCCUGGUUCACU   1
  |||||||||||||*|||||||
targets:1487   GGCUUGUUUGGGAACAAGUGA   1507

1.5 PREDICTED: Zea mays 50S ribosomal protein L12-2 (LOC100283458), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008649690.2
ncRNA:21   CCGAACAAACCCUGGUUCACU   1
  ||||||||||||||||||*||
targets:728   GGCUUGUUUGGGACCAAGGGA   748

1.5 PREDICTED: Zea mays VTC2 (LOC100283852), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008649689.2
ncRNA:21   CCGAACAAACCCUGGUUCACU   1
  ||||||||||||||||||*||
targets:740   GGCUUGUUUGGGACCAAGGGA   760

1.5 PREDICTED: Zea mays VTC2 (LOC100283852), transcript variant X1, mRNA NA coding protein psRNATarget
LQ238080.1
ncRNA:21   CCGAACAAACCCUGGUUCACU   1
  |||||||||||||*||||||=
targets:3   GGCUUGUUUGGGAGCAAGUGG   23

2.5 Sequence 4075 from Patent EP2985353 NA coding protein psRNATarget
HI405942.1
ncRNA:21   CCGAACAAACCCUGGUUCACU   1
  |||||||||||||*||||||=
targets:3   GGCUUGUUUGGGAGCAAGUGG   23

2.5 Sequence 4067 from Patent EP2074227 NA coding protein psRNATarget
JB166411.1
ncRNA:21   CCGAACAAACCCUGGUUCACU   1
  |||||||||||||*||||||=
targets:3   GGCUUGUUUGGGAGCAAGUGG   23

2.5 Sequence 4075 from Patent EP2559767 NA coding protein psRNATarget
HI405950.1
ncRNA:21   CCGAACAAACCCUGGUUCACU   1
  |||||||||||||*||||||=
targets:3   GGCUUGUUUGGGAGCAAGUGG   23

2.5 Sequence 4075 from Patent EP2074227 NA coding protein psRNATarget
LQ238072.1
ncRNA:21   CCGAACAAACCCUGGUUCACU   1
  |||||||||||||*||||||=
targets:3   GGCUUGUUUGGGAGCAAGUGG   23

2.5 Sequence 4067 from Patent EP2985353 NA coding protein psRNATarget
JB166403.1
ncRNA:21   CCGAACAAACCCUGGUUCACU   1
  |||||||||||||*||||||=
targets:3   GGCUUGUUUGGGAGCAAGUGG   23

2.5 Sequence 4067 from Patent EP2559767 NA coding protein psRNATarget
EZ077632.1
ncRNA:21   CCGAACAAACCCUGGUUCACU   1
  |||||||||||||*||||||=
targets:63   GGCUUGUUUGGGAGCAAGUGG   83

2.5 TSA: Zea mays contig13271, mRNA sequence NA coding protein psRNATarget
BT033702.1
ncRNA:21   CCGAACAAACCCUGGUUCACU   1
  |||||||||||||*||||||=
targets:955   GGCUUGUUUGGGAGCAAGUGG   975

2.5 Zea mays full-length cDNA clone ZM_BFc0115E06 mRNA, complete cds NA coding protein psRNATarget
NM_001137008.1
ncRNA:21   CCGAACAAACCCUGGUUCACU   1
  |||||||||||||*||||||=
targets:955   GGCUUGUUUGGGAGCAAGUGG   975

2.5 Zea mays calcineurin B-like protein (CBL1), mRNA NA coding protein psRNATarget
AY104107.2
ncRNA:21   CCGAACAAACCCUGGUUCACU   1
  |||||||||||||*||||||=
targets:1203   GGCUUGUUUGGGAGCAAGUGG   1223

2.5 Zea mays PCO062189 mRNA sequence NA coding protein psRNATarget
EU968858.1
ncRNA:21   CCGAACAAACCCUGGUUCACU   1
  |||||||||||||*||||||=
targets:1062   GGCUUGUUUGGGAGCAAGUGG   1082

2.5 Zea mays clone 324588 mRNA sequence NA coding protein psRNATarget
NM_001196723.1
ncRNA:21   CCGAACAAACCCUGGUUCACU   1
  |||||||||||||*||||||=
targets:1136   GGCUUGUUUGGGAGCAAGUGG   1156

2.5 Zea mays uncharacterized LOC100502246 (LOC100502246), mRNA NA coding protein psRNATarget
BT087519.1
ncRNA:21   CCGAACAAACCCUGGUUCACU   1
  |||||||||||||*||||||=
targets:1136   GGCUUGUUUGGGAGCAAGUGG   1156

2.5 Zea mays full-length cDNA clone ZM_BFb0100J09 mRNA, complete cds NA coding protein psRNATarget
EZ087639.1
ncRNA:21   CCGAACAAACCCUGGUUCACU   1
  **=||||*||||||||||||*
targets:40   AUUUUGUAUGGGACCAAGUGU   60

3.0 TSA: Zea mays contig23285, mRNA sequence NA coding protein psRNATarget
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