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BaseInfo

ncRNA ID	novel_zma_miR8621
Species	Zea mays
Class	miRNA
Genome position	Chr6:124858201-124858274 [+]
Reference genome	RefGen_v4
Source	SRR4237220;SRR4237223
Length	24
Mature sequence(if miRNA)	51 - AAUCCCCUCCAAUCCUCCCGAGAU - 74
Stem-loop(if miRNA)	--CC                               UA     CGGGAGGAUUGGAGGGGAUUGGAGGGGAAAU  G     |||||||||||||||||||||||||||||||     GCCCUCCUAACCUCCCCUAACCUCCCCUUUA  U UAGA                               UU
Stem-loop sequence	CCCGGGAGGAUUGGAGGGGAUUGGAGGGGAAAUUAGUUUAUUUCCCCUCCAAUCCCCUCCAAUCCUCCCGAGAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ106816.1	ncRNA:24   UAGAGCCCUCCUAACCUCCCCUAA   1   ||=*|||||||||||||||||||| targets:253   AUUCCGGGAGGAUUGGAGGGGAUU   276 Target Full Sequence	0.0	TSA: Zea mays contig42474, mRNA sequence	NA	coding protein	psRNATarget
LQ235148.1	ncRNA:24   UAGAGCCCUCCUAACCUCCCCUAA   1   |||*|||||||||||*|||||||| targets:10   AUCCCGGGAGGAUUGAAGGGGAUU   33 Target Full Sequence	1.5	Sequence 1143 from Patent EP2985353	NA	coding protein	psRNATarget
HI403018.1	ncRNA:24   UAGAGCCCUCCUAACCUCCCCUAA   1   |||*|||||||||||*|||||||| targets:10   AUCCCGGGAGGAUUGAAGGGGAUU   33 Target Full Sequence	1.5	Sequence 1143 from Patent EP2074227	NA	coding protein	psRNATarget
JB163479.1	ncRNA:24   UAGAGCCCUCCUAACCUCCCCUAA   1   |||*|||||||||||*|||||||| targets:10   AUCCCGGGAGGAUUGAAGGGGAUU   33 Target Full Sequence	1.5	Sequence 1143 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020543595.1	ncRNA:24   UAGAGCCCUCCUAACCUCCCCUAA   1   |||*|||||||||||*|||||||| targets:1473   AUCACGGGAGGAUUGUAGGGGAUU   1496 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109942132 (LOC109942132), mRNA	NA	coding protein	psRNATarget
XM_020551688.1	ncRNA:24   UAGAGCCCUCCUAACCUCCCCUAA   1   |||*||*||||||||||||||||| targets:2106   AUCCCGAGAGGAUUGGAGGGGAUU   2129 Target Full Sequence	1.0	PREDICTED: Zea mays hypothetical protein (LOC100383632), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ098881.1	ncRNA:24   UAGAGCCCUCCUAACCUCCCCUAA   1   |||*=||||||||*|||||||||| targets:34   AUCAUGGGAGGAUCGGAGGGGAUU   57 Target Full Sequence	1.5	TSA: Zea mays contig34536, mRNA sequence	NA	coding protein	psRNATarget
EU960415.1	ncRNA:24   UAGAGCCCUCCUAACCUCCCCUAA   1   ||-||*|||||||||||||||||| targets:695   AU-UCUGGAGGAUUGGAGGGGAUU   717 Target Full Sequence	1.0	Zea mays clone 224733 cytochrome c oxidase polypeptide VIb mRNA, complete cds	NA	coding protein	psRNATarget
XM_020540504.1	ncRNA:24   UAGAGCCCUCCUAACCUCCCCUAA   1   |||*=|*||||||||||||||||| targets:1803   AUCCUGAGAGGAUUGGAGGGGAUU   1826 Target Full Sequence	1.0	PREDICTED: Zea mays nucleolar RNA helicase 2 (LOC100281387), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ093244.1	ncRNA:24   UAGAGC-CCUCCUAACCUCCCCUAA   1   =*=|=|-|||||||||||||||||| targets:12   GGUUUGAGGAGGAUUGGAGGGGAUU   36 Target Full Sequence	2.0	TSA: Zea mays contig28894, mRNA sequence	NA	coding protein	psRNATarget
XM_020540503.1	ncRNA:24   UAGAGCCCUCCUAACCUCCCCUAA   1   |||*=|*||||||||||||||||| targets:2241   AUCCUGAGAGGAUUGGAGGGGAUU   2264 Target Full Sequence	1.0	PREDICTED: Zea mays nucleolar RNA helicase 2 (LOC100281387), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT054737.1	ncRNA:24   UAGAGC-CCUCCUAACCUCCCCUAA   1   =**|=|-|||||||||||||||||| targets:126   GGAUUGAGGAGGAUUGGAGGGGAUU   150 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0011M02 mRNA, complete cds	NA	coding protein	psRNATarget
HI409663.1	ncRNA:24   UAGAGCCCUCCUAACCUCCCCUAA   1   |||*|*|||||||*|||||||||| targets:23   AUCCCAGGAGGAUCGGAGGGGAUU   46 Target Full Sequence	2.5	Sequence 7788 from Patent EP2074227	NA	coding protein	psRNATarget
JB170124.1	ncRNA:24   UAGAGCCCUCCUAACCUCCCCUAA   1   |||*|*|||||||*|||||||||| targets:23   AUCCCAGGAGGAUCGGAGGGGAUU   46 Target Full Sequence	2.5	Sequence 7788 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241793.1	ncRNA:24   UAGAGCCCUCCUAACCUCCCCUAA   1   |||*|*|||||||*|||||||||| targets:23   AUCCCAGGAGGAUCGGAGGGGAUU   46 Target Full Sequence	2.5	Sequence 7788 from Patent EP2985353	NA	coding protein	psRNATarget
EU961132.1	ncRNA:24   UAGAGCCCUCCUAACCUCCCCUAA   1   |||*|*|||||||*|||||||||| targets:777   AUCCCAGGAGGAUCGGAGGGGAUU   800 Target Full Sequence	2.5	Zea mays clone 232865 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds	NA	coding protein	psRNATarget
BT040716.2	ncRNA:24   UAGAGCCCUCCUAACCUCCCCUAA   1   |||*|*|||||||*|||||||||| targets:816   AUCCCAGGAGGAUCGGAGGGGAUU   839 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0120F10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147738.1	ncRNA:24   UAGAGCCCUCCUAACCUCCCCUAA   1   |||*|*|||||||*|||||||||| targets:821   AUCCCAGGAGGAUCGGAGGGGAUU   844 Target Full Sequence	2.5	Zea mays putative glutathione peroxidase (LOC100273297), mRNA	NA	coding protein	psRNATarget
BT066291.1	ncRNA:24   UAGAGCCCUCCUAACCUCCCCUAA   1   |||*|*|||||||*|||||||||| targets:821   AUCCCAGGAGGAUCGGAGGGGAUU   844 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0176M03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020552749.1	ncRNA:24   UAGAGC-CCUCCUAACCUCCCCUAA   1   =*=|=|-||=||||||||||||||| targets:3208   GGUUUGAGGGGGAUUGGAGGGGAUU   3232 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103654236 (LOC103654236), mRNA	NA	coding protein	psRNATarget
BT062266.1	ncRNA:20   GCCCUCCUAACCUCCCCUAA   1   |||||||||||*|||||||| targets:1   CGGGAGGAUUGAAGGGGAUU   20 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0271J02 mRNA, complete cds	NA	coding protein	psRNATarget
EU945995.1	ncRNA:24   UAGAGCCCUCCUAACCUCCCCUAA   1   |||*||**=||||||||||||||| targets:358   AUCACGAAGGGAUUGGAGGGGAUU   381 Target Full Sequence	3.0	Zea mays clone 293035 mRNA sequence	NA	coding protein	psRNATarget
XM_008649581.2	ncRNA:24   UAGAGCCCUCCUAACCUCCCCUAA   1   |||*=*|*|||||||||||||||| targets:1755   AUCAUAGAAGGAUUGGAGGGGAUU   1778 Target Full Sequence	2.0	PREDICTED: Zea mays pentatricopeptide repeat protein (LOC100527940), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001317055.1	ncRNA:24   UAGAGCCCUCCUAACCUCCCCUAA   1   |||*-|||=|*||||||||||||| targets:1455   AUCA-GGGGGAAUUGGAGGGGAUU   1477 Target Full Sequence	2.0	Zea mays Membrane metalloprotease ARASP chloroplastic (LOC100274122), mRNA	NA	coding protein	psRNATarget
BT042257.1	ncRNA:24   UAGAGCCCUCCUAACCUCCCCUAA   1   |||*-|||=|*||||||||||||| targets:1455   AUCA-GGGGGAAUUGGAGGGGAUU   1477 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0181O20 mRNA, complete cds	NA	coding protein	psRNATarget