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BaseInfo

ncRNA ID novel_zma_miR8616
Species Zea mays
Class miRNA
Genome position Chr6:78395328-78395401 [+]
Reference genome RefGen_v4
Source SRR4237220
Length 24
Mature sequence(if miRNA) 51 - ACUGUCCAGUGCGUGCCACGUCAG - 74
Stem-loop(if miRNA) --    AUG   A      ACAGUCCGGUGGCGCACCG
  GACG   GGC CACCGG                   G
  ||||   ||| ||||||                   A
  CUGC   CCG UGCGUG                   C
GA    --A   -      ACCUGUCACUUGUCACCGA
Stem-loop sequence GACGAUGGGCACACCGGACAGUCCGGUGGCGCACCGGACAGCCACUGUUCACUGUCCAGUGCGUGCCACGUCAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020541938.1
ncRNA:24   GACUGCACCGUGCGUGACCUGUCA   1
  ||||||||||=|||||*|||||||
targets:1233   CUGACGUGGCGCGCACCGGACAGU   1256

2.5 PREDICTED: Zea mays uncharacterized LOC100272534 (LOC100272534), transcript variant X1, mRNA NA coding protein psRNATarget