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BaseInfo

ncRNA ID	novel_zma_miR8612
Species	Zea mays
Class	miRNA
Genome position	Chr6:108959219-108959300 [-]
Reference genome	RefGen_v4
Source	SRR4237220;SRR4237227
Length	21
Mature sequence(if miRNA)	1 - UCCCCUCCAAUCCCCUUCGAU - 21
Stem-loop(if miRNA)	--U    U      AUA           -A   U   U   A    GGAG GGAUUG   GGGAUUAAAUU  UCU CUA UCA U    |||| ||||||   |||||||||||  ||| ||| |||    CUUC CCUAAC   CCCUAAUUUAG  AGA GAU AGU U UAG    C      CUC           GG   -   C   U
Stem-loop sequence	UGGAGUGGAUUGAUAGGGAUUAAAUUAUCUUCUAUUCAAUUUUGACUAGAGAGGGAUUUAAUCCCCUCCAAUCCCCUUCGAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT085111.1	ncRNA:21   UAGCUUCCCCUAACCUCCCCU   1   ||=|||||||||||||||||| targets:1278   AUUGAAGGGGAUUGGAGGGGA   1298 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0292J13 mRNA, complete cds	NA	coding protein	psRNATarget
HI402991.1	ncRNA:21   UAGCUUCCCCUAACCUCCCCU   1   ||||||||*|||||||||||| targets:20   AUCGAAGGAGAUUGGAGGGGA   40 Target Full Sequence	1.5	Sequence 1116 from Patent EP2074227	NA	coding protein	psRNATarget
JB163452.1	ncRNA:21   UAGCUUCCCCUAACCUCCCCU   1   ||||||||*|||||||||||| targets:20   AUCGAAGGAGAUUGGAGGGGA   40 Target Full Sequence	1.5	Sequence 1116 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235121.1	ncRNA:21   UAGCUUCCCCUAACCUCCCCU   1   ||||||||*|||||||||||| targets:20   AUCGAAGGAGAUUGGAGGGGA   40 Target Full Sequence	1.5	Sequence 1116 from Patent EP2985353	NA	coding protein	psRNATarget
BT069231.2	ncRNA:21   UAGCUUCCCCUAACCUCCCCU   1   ||||||||||||||||||*|| targets:994   AUCGAAGGGGAUUGGAGGAGA   1014 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0366D18 mRNA, complete cds	NA	coding protein	psRNATarget
EU941872.1	ncRNA:21   UAGCUUCCCCUAACCUCCCCU   1   ||=||||||||||||||*||| targets:62   AUUGAAGGGGAUUGGAGAGGA   82 Target Full Sequence	2.5	Zea mays clone 1471472 mRNA sequence	NA	coding protein	psRNATarget
XM_020552749.1	ncRNA:21   UAGCUUCCCCUAACCUCCCCU   1   *|=||=||||||||||||||| targets:3210   UUUGAGGGGGAUUGGAGGGGA   3230 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103654236 (LOC103654236), mRNA	NA	coding protein	psRNATarget
XM_020546797.1	ncRNA:21   UAGCUUCCCCUAACCUCCCCU   1   ||=||||||||||||||*||| targets:5173   AUUGAAGGGGAUUGGAGAGGA   5193 Target Full Sequence	2.5	PREDICTED: Zea mays protein TIFY 11d (LOC103643602), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008666766.2	ncRNA:21   UAGCUUCCCCUAACCUCCCCU   1   ||=||||||||||||||*||| targets:5307   AUUGAAGGGGAUUGGAGAGGA   5327 Target Full Sequence	2.5	PREDICTED: Zea mays protein TIFY 11d (LOC103643602), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT054737.1	ncRNA:21   UAGCUUCCCCUAACCUCCCCU   1   ||=||=|*||||||||||||| targets:128   AUUGAGGAGGAUUGGAGGGGA   148 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0011M02 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020543912.1	ncRNA:21   UAGCUUCCCCUAACCUCCCCU   1   |*||||||||||||||||||* targets:4064   ACCGAAGGGGAUUGGAGGGGC   4084 Target Full Sequence	1.0	PREDICTED: Zea mays coronatine-insensitive protein homolog 2-like (LOC103638597), mRNA	NA	coding protein	psRNATarget
EZ093244.1	ncRNA:21   UAGCUUCCCCUAACCUCCCCU   1   *|=||=|*||||||||||||| targets:14   UUUGAGGAGGAUUGGAGGGGA   34 Target Full Sequence	3.0	TSA: Zea mays contig28894, mRNA sequence	NA	coding protein	psRNATarget
XM_020549567.1	ncRNA:21   UAGCU-UCCCCUAACCUCCCCU   1   =**||-|||||||||||||||| targets:994   GGAGACAGGGGAUUGGAGGGGA   1015 Target Full Sequence	3.0	PREDICTED: Zea mays hypothetical protein (LOC100273482), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001155748.1	ncRNA:21   UAGCUUCCCCUAACCUCCCCU   1   =**||||||||||||||||*| targets:1054   GGAGAAGGGGAUUGGAGGGAA   1074 Target Full Sequence	2.5	Zea mays uncharacterized LOC100282842 (gpm256), mRNA	NA	coding protein	psRNATarget
EU962483.1	ncRNA:21   UAGCUUCCCCUAACCUCCCCU   1   =**||||||||||||||||*| targets:1054   GGAGAAGGGGAUUGGAGGGAA   1074 Target Full Sequence	2.5	Zea mays clone 243072 EF hand family protein mRNA, complete cds	NA	coding protein	psRNATarget
JB167234.1	ncRNA:21   UAGCUUCCCCUAACCUCCCCU   1   |*|*=|||||||||||||||* targets:7   AACUGAGGGGAUUGGAGGGGC   27 Target Full Sequence	3.0	Sequence 4898 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238903.1	ncRNA:21   UAGCUUCCCCUAACCUCCCCU   1   |*|*=|||||||||||||||* targets:7   AACUGAGGGGAUUGGAGGGGC   27 Target Full Sequence	3.0	Sequence 4898 from Patent EP2985353	NA	coding protein	psRNATarget
HI406773.1	ncRNA:21   UAGCUUCCCCUAACCUCCCCU   1   |*|*=|||||||||||||||* targets:7   AACUGAGGGGAUUGGAGGGGC   27 Target Full Sequence	3.0	Sequence 4898 from Patent EP2074227	NA	coding protein	psRNATarget