Search result

BaseInfo

ncRNA ID	novel_zma_miR8606
Species	Zea mays
Class	miRNA
Genome position	Chr5:179686915-179687109 [+]
Reference genome	RefGen_v4
Source	SRR4237220
Length	24
Mature sequence(if miRNA)	172 - AAUUCGGUUAGAAAUCGUUUCGAC - 195
Stem-loop(if miRNA)	--     A                 C  C               C   U    U       A      GA         GU              CC   CGAAA GAUUUUUAACCGGAUUG UU UCUAAUUUAUAUAAA UUU AUUA CUGAAAC AUUUCG  UGUAAUCCG  AUAAACGAAUAAGG  U   ||||| ||||||||||||||||| || ||||||||||||||| ||| |||| ||||||| ||||||  |||||||||  ||||||||||||||  U   GCUUU CUAAAGAUUGGCUUAAC AA AGAUUAAAUAUAUUU AAA UAAU GAUUUUG UAAAGC  ACGUUAGGC  UGUUUGCUUGUUCC  A CA     G                 A  U               A   C    C       C      UC         UG              AG
Stem-loop sequence	CGAAAAGAUUUUUAACCGGAUUGCUUCUCUAAUUUAUAUAAACUUUUAUUAUCUGAAACAAUUUCGGAUGUAAUCCGGUAUAAACGAAUAAGGCCUUAGACCUUGUUCGUUUGUGUCGGAUUGCACUCGAAAUCGUUUUAGCUAAUCAAAAUUUAUAUAAAUUAGAUAAACAAUUCGGUUAGAAAUCGUUUCGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI405932.1	ncRNA:24   CAGCUUUGCUAAAGAUUGGCUUAA   1   ||||=|||||||||||||||=||| targets:40   GUCGGAACGAUUUCUAACCGGAUU   63 Target Full Sequence	1.5	Sequence 4057 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238062.1	ncRNA:24   CAGCUUUGCUAAAGAUUGGCUUAA   1   ||||=|||||||||||||||=||| targets:40   GUCGGAACGAUUUCUAACCGGAUU   63 Target Full Sequence	1.5	Sequence 4057 from Patent EP2985353	NA	coding protein	psRNATarget
JB166393.1	ncRNA:24   CAGCUUUGCUAAAGAUUGGCUUAA   1   ||||=|||||||||||||||=||| targets:40   GUCGGAACGAUUUCUAACCGGAUU   63 Target Full Sequence	1.5	Sequence 4057 from Patent EP2559767	NA	coding protein	psRNATarget
HI407238.1	ncRNA:24   CAGCUUUGCUAAAGAUUGGCUUAA   1   ||||=|||||||||||||||=||| targets:41   GUCGGAACGAUUUCUAACCGGAUU   64 Target Full Sequence	1.5	Sequence 5363 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239368.1	ncRNA:24   CAGCUUUGCUAAAGAUUGGCUUAA   1   ||||=|||||||||||||||=||| targets:41   GUCGGAACGAUUUCUAACCGGAUU   64 Target Full Sequence	1.5	Sequence 5363 from Patent EP2985353	NA	coding protein	psRNATarget
HI405930.1	ncRNA:24   CAGCUUUGCUAAAGAUUGGCUUAA   1   ||||=|||||||||||||||=||| targets:41   GUCGGAACGAUUUCUAACCGGAUU   64 Target Full Sequence	1.5	Sequence 4055 from Patent EP2074227	NA	coding protein	psRNATarget
JB167699.1	ncRNA:24   CAGCUUUGCUAAAGAUUGGCUUAA   1   ||||=|||||||||||||||=||| targets:41   GUCGGAACGAUUUCUAACCGGAUU   64 Target Full Sequence	1.5	Sequence 5363 from Patent EP2559767	NA	coding protein	psRNATarget
JB166391.1	ncRNA:24   CAGCUUUGCUAAAGAUUGGCUUAA   1   ||||=|||||||||||||||=||| targets:41   GUCGGAACGAUUUCUAACCGGAUU   64 Target Full Sequence	1.5	Sequence 4055 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238060.1	ncRNA:24   CAGCUUUGCUAAAGAUUGGCUUAA   1   ||||=|||||||||||||||=||| targets:41   GUCGGAACGAUUUCUAACCGGAUU   64 Target Full Sequence	1.5	Sequence 4055 from Patent EP2985353	NA	coding protein	psRNATarget
FJ805752.1	ncRNA:24   CAGCUUUGCUAAAGAUUGGCUUAA   1   ||||=|||||||||||||||=||| targets:1115   GUCGGAACGAUUUCUAACCGGAUU   1138 Target Full Sequence	1.5	Zea mays DRE-binding protein 4 (DBP4) mRNA, complete cds	NA	coding protein	psRNATarget
NM_001177010.1	ncRNA:24   CAGCUUUGCUAAAGAUUGGCUUAA   1   ||||=|||||||||||||||=||| targets:1115   GUCGGAACGAUUUCUAACCGGAUU   1138 Target Full Sequence	1.5	Zea mays DRE-binding protein 4 (DBP4), mRNA	NA	coding protein	psRNATarget
NM_001156428.1	ncRNA:24   CAGCUUUGCUAAAGAUUGGCUUAA   1   ||||=|||||||*||||||||||| targets:1479   GUCGGAACGAUUCCUAACCGAAUU   1502 Target Full Sequence	1.5	Zea mays agmatine deiminase (LOC100283528), mRNA	NA	coding protein	psRNATarget
EU965022.1	ncRNA:24   CAGCUUUGCUAAAGAUUGGCUUAA   1   ||||=|||||||*||||||||||| targets:1479   GUCGGAACGAUUCCUAACCGAAUU   1502 Target Full Sequence	1.5	Zea mays clone 283266 agmatine deiminase mRNA, complete cds	NA	coding protein	psRNATarget