Search result

BaseInfo

ncRNA ID	novel_zma_miR8604
Species	Zea mays
Class	miRNA
Genome position	Chr10:145459344-145459517 [-]
Reference genome	RefGen_v4
Source	SRR4237220
Length	21
Mature sequence(if miRNA)	1 - CUCAUGGAACCAAACAGGCCC - 21
Stem-loop(if miRNA)	--                            CAG     AAUCCC                     -   AA   AAACACCCAACAUAUGGU   GCCUGUUUGGUUCUAUGGGACUAAACUU   AGUUU      UCCCUUUUAGUCCCUAAAUUG CGA  GUG                  U   ||||||||||||||||||||||||||||   |||||      ||||||||||||||||||||| |||  |||   CGGACAAACCAAGGUACUCUGAUUUGAA   UCAGA      AGGGAAAAUCAGGGAUUUAAC GUU  UGU                  U CC                            --A     -----C                     A   --   GUUCCUGAUUUUACCUGA
Stem-loop sequence	GCCUGUUUGGUUCUAUGGGACUAAACUUCAGAGUUUAAUCCCUCCCUUUUAGUCCCUAAAUUGCGAAAGUGAAACACCCAACAUAUGGUUUAGUCCAUUUUAGUCCUUGUGUUUGACAAUUUAGGGACUAAAAGGGACAGACUAAAGUUUAGUCUCAUGGAACCAAACAGGCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT067716.1	ncRNA:21   CCCGGACAAACCAAGGUACUC   1   ||||*|||||||||||||||| targets:1396   GGGCAUGUUUGGUUCCAUGAG   1416 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0138J16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176237.1	ncRNA:21   CCCGGACAAACCAAGGUACUC   1   ||||*|||||||||||||||| targets:1396   GGGCAUGUUUGGUUCCAUGAG   1416 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383589 (LOC100383589), mRNA	NA	coding protein	psRNATarget
BT066057.2	ncRNA:21   CCCGGACAAACCAAGGUACUC   1   ||||*||||||||||||*||| targets:774   GGGCAUGUUUGGUUCCAAGAG   794 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0211I17 mRNA, complete cds	NA	coding protein	psRNATarget
AY111315.1	ncRNA:21   CCCGGACAAACCAAGGUACUC   1   |**||||||||||||*||||| targets:771   GUCCCUGUUUGGUUCAAUGAG   791 Target Full Sequence	2.5	Zea mays CL3160_1 mRNA sequence	NA	coding protein	psRNATarget