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BaseInfo

ncRNA ID novel_zma_miR8601
Species Zea mays
Class miRNA
Genome position Chr5:155103562-155103655 [+]
Reference genome RefGen_v4
Source SRR4237220;SRR4237222;SRR4237224;SRR4237225;SRR5099742;SRR5105963
Length 25
Mature sequence(if miRNA) 70 - AAUAUUCGAGAACGGAGGUAGUAUC - 94
Stem-loop(if miRNA) --    C           UUU         GCUUG    -      GUU
  UAUU CCUCCGUUCUU   UAUUUGUCG     UCGC GGUUUA   U
  |||| |||||||||||   |||||||||     |||| ||||||   A
  AUGA GGAGGCAAGAG   AUAAACAGC     GGCG UCAAGU   A
CU    U           CUU         ----A    A      AAA
Stem-loop sequence UAUUCCCUCCGUUCUUUUUUAUUUGUCGGCUUGUCGCGGUUUAGUUUAAAAAUGAACUAGCGGACGACAAAUAUUCGAGAACGGAGGUAGUAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT061281.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  ||||||=||||||||||||||||||
targets:1369   GAUACUGCCUCCGUUCUCGAAUAUU   1393

1.0 Zea mays full-length cDNA clone ZM_BFb0131A16 mRNA, complete cds NA coding protein psRNATarget
XM_020545142.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *||||||||||||||||||||||||
targets:380   UAUACUACCUCCGUUCUCGAAUAUU   404

0.0 PREDICTED: Zea mays uncharacterized LOC100382526 (LOC100382526), transcript variant X3, mRNA NA coding protein psRNATarget
EZ082762.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=|||||||||||||||||||||||
targets:4   UGUACUACCUCCGUUCUCGAAUAUU   28

0.0 TSA: Zea mays contig18405, mRNA sequence NA coding protein psRNATarget
EZ071175.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *||||||||||||||||=|||||||
targets:91   UAUACUACCUCCGUUCUUGAAUAUU   115

1.5 TSA: Zea mays contig06812, mRNA sequence NA coding protein psRNATarget
EZ053711.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *|||||||||=||||||||||||||
targets:97   UAUACUACCUUCGUUCUCGAAUAUU   121

1.0 TSA: Zea mays contig54833, mRNA sequence NA coding protein psRNATarget
HI409913.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=|||||||||||||||||||||||
targets:182   UGUACUACCUCCGUUCUCGAAUAUU   206

0.0 Sequence 8038 from Patent EP2074227 NA coding protein psRNATarget
LQ242043.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=|||||||||||||||||||||||
targets:182   UGUACUACCUCCGUUCUCGAAUAUU   206

0.0 Sequence 8038 from Patent EP2985353 NA coding protein psRNATarget
JB170374.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=|||||||||||||||||||||||
targets:182   UGUACUACCUCCGUUCUCGAAUAUU   206

0.0 Sequence 8038 from Patent EP2559767 NA coding protein psRNATarget
LQ242205.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=|||||||||||||||||||||||
targets:182   UGUACUACCUCCGUUCUCGAAUAUU   206

0.0 Sequence 8200 from Patent EP2985353 NA coding protein psRNATarget
JB170536.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=|||||||||||||||||||||||
targets:182   UGUACUACCUCCGUUCUCGAAUAUU   206

0.0 Sequence 8200 from Patent EP2559767 NA coding protein psRNATarget
HI410075.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=|||||||||||||||||||||||
targets:182   UGUACUACCUCCGUUCUCGAAUAUU   206

0.0 Sequence 8200 from Patent EP2074227 NA coding protein psRNATarget
EZ110367.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=|||||||||||||||||||||||
targets:419   UGUACUACCUCCGUUCUCGAAUAUU   443

0.0 TSA: Zea mays contig46027, mRNA sequence NA coding protein psRNATarget
EU945472.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=|||||||||||||||||||||||
targets:427   UGUACUACCUCCGUUCUCGAAUAUU   451

0.0 Zea mays clone 274397 mRNA sequence NA coding protein psRNATarget
XM_020537813.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=|||||||||||||||||||||||
targets:863   UGUACUACCUCCGUUCUCGAAUAUU   887

0.0 PREDICTED: Zea mays uncharacterized LOC103625705 (LOC103625705), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020537812.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=|||||||||||||||||||||||
targets:917   UGUACUACCUCCGUUCUCGAAUAUU   941

0.0 PREDICTED: Zea mays uncharacterized LOC103625705 (LOC103625705), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020537811.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=|||||||||||||||||||||||
targets:969   UGUACUACCUCCGUUCUCGAAUAUU   993

0.0 PREDICTED: Zea mays uncharacterized LOC103625705 (LOC103625705), transcript variant X2, mRNA NA coding protein psRNATarget
EU962019.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=|||||||||||||||||||||||
targets:1017   UGUACUACCUCCGUUCUCGAAUAUU   1041

0.0 Zea mays clone 239644 mRNA sequence NA coding protein psRNATarget
XM_020537810.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=|||||||||||||||||||||||
targets:1022   UGUACUACCUCCGUUCUCGAAUAUU   1046

0.0 PREDICTED: Zea mays uncharacterized LOC103625705 (LOC103625705), transcript variant X1, mRNA NA coding protein psRNATarget
BT017193.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=|||||||||||||||||||||||
targets:950   UGUACUACCUCCGUUCUCGAAUAUU   974

0.0 Zea mays clone EL01N0371C09.c mRNA sequence NA coding protein psRNATarget
EU965353.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=|||||||||||||||||||||||
targets:1018   UGUACUACCUCCGUUCUCGAAUAUU   1042

0.0 Zea mays clone 285514 CAPIP1 mRNA, complete cds NA coding protein psRNATarget
BT040068.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=|||||||||||||||||||||||
targets:913   UGUACUACCUCCGUUCUCGAAUAUU   937

0.0 Zea mays full-length cDNA clone ZM_BFc0063E17 mRNA, complete cds NA coding protein psRNATarget
NM_001147497.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=|||||||||||||||||||||||
targets:913   UGUACUACCUCCGUUCUCGAAUAUU   937

0.0 Zea mays CAPIP1 (LOC100273048), mRNA NA coding protein psRNATarget
EU960779.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=|||||||||||||||||||||||
targets:1304   UGUACUACCUCCGUUCUCGAAUAUU   1328

0.0 Zea mays clone 228509 mRNA sequence NA coding protein psRNATarget
XM_008665300.2
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *|||||||||=||||||||||||||
targets:2067   UAUACUACCUUCGUUCUCGAAUAUU   2091

1.0 PREDICTED: Zea mays trichohyalin-like (LOC103641991), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008665299.2
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *|||||||||=||||||||||||||
targets:2079   UAUACUACCUUCGUUCUCGAAUAUU   2103

1.0 PREDICTED: Zea mays trichohyalin-like (LOC103641991), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008665301.2
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *|||||||||=||||||||||||||
targets:2132   UAUACUACCUUCGUUCUCGAAUAUU   2156

1.0 PREDICTED: Zea mays trichohyalin-like (LOC103641991), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020545884.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *|||||||=||||||||||||||||
targets:3506   UAUACUACUUCCGUUCUCGAAUAUU   3530

1.0 PREDICTED: Zea mays E3 ubiquitin-protein ligase PUB23 (LOC103642284), mRNA NA coding protein psRNATarget
XM_008658418.2
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=|||||||||||||||||||||||
targets:4920   AGUACUACCUCCGUUCUCGAAUAUU   4944

0.0 PREDICTED: Zea mays ABC transporter G family member 36 (LOC103636060), mRNA NA coding protein psRNATarget
BT060531.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  ||||||||||||||||||*||||||
targets:409   GAUACUACCUCCGUUCUCAAAUAUU   433

1.5 Zea mays full-length cDNA clone ZM_BFb0012H17 mRNA, complete cds NA coding protein psRNATarget
EZ050211.1
ncRNA:25   CUAUGAU-GGAGGCAAGAGCUUAUAA   1
  |=|||||-||||||||||||||||||
targets:31   GGUACUAACCUCCGUUCUCGAAUAUU   56

2.0 TSA: Zea mays contig51330, mRNA sequence NA coding protein psRNATarget
EU975574.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  **|||||||||||||||||||||||
targets:28   UCUACUACCUCCGUUCUCGAAUAUU   52

0.0 Zea mays clone 492870 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU950207.1
ncRNA:25   CU--AUGAUGGAGGCAAGAGCUUAUAA   1
  ||--|||||=|||||||||||||||||
targets:28   GAGCUACUAUCUCCGUUCUCGAAUAUU   54

1.0 Zea mays clone 469419 mRNA sequence NA coding protein psRNATarget
EU946581.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=|||||||||||||||=|||||||
targets:186   UGUACUACCUCCGUUCUUGAAUAUU   210

1.5 Zea mays clone 317675 mRNA sequence NA coding protein psRNATarget
BT083888.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=||||||||=||||||||||||||
targets:1102   UGUACUACCUUCGUUCUCGAAUAUU   1126

1.0 Zea mays full-length cDNA clone ZM_BFb0051D08 mRNA, complete cds NA coding protein psRNATarget
NM_001177150.2
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=||||||||=||||||||||||||
targets:1253   UGUACUACCUUCGUUCUCGAAUAUU   1277

1.0 Zea mays hypothetical protein (umc1687), mRNA NA coding protein psRNATarget
BT042757.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=||||||||=||||||||||||||
targets:1270   UGUACUACCUUCGUUCUCGAAUAUU   1294

1.0 Zea mays full-length cDNA clone ZM_BFc0037D18 mRNA, complete cds NA coding protein psRNATarget
NM_001148677.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=||||||||=||||||||||||||
targets:1270   UGUACUACCUUCGUUCUCGAAUAUU   1294

1.0 Zea mays hypothetical protein (umc1687), mRNA NA coding protein psRNATarget
XM_008676081.2
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=||=||||||||||||||||||||
targets:2486   UGUAUUACCUCCGUUCUCGAAUAUU   2510

0.0 PREDICTED: Zea mays WPP domain-associated protein (LOC103650495), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008676082.2
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=||=||||||||||||||||||||
targets:2490   UGUAUUACCUCCGUUCUCGAAUAUU   2514

0.0 PREDICTED: Zea mays WPP domain-associated protein (LOC103650495), transcript variant X2, mRNA NA coding protein psRNATarget
EZ084539.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *|||||||||||||||||*||||||
targets:15   AAUACUACCUCCGUUCUCAAAUAUU   39

1.5 TSA: Zea mays contig20183, mRNA sequence NA coding protein psRNATarget
AY111450.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=|||||||||=||||||||||=||
targets:281   UGUACUACCUCUGUUCUCGAAUGUU   305

2.5 Zea mays CL68522_1 mRNA sequence NA coding protein psRNATarget
EZ091447.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *|||*||||||||||||||||||||
targets:61   CAUAAUACCUCCGUUCUCGAAUAUU   85

0.0 TSA: Zea mays contig27095, mRNA sequence NA coding protein psRNATarget
NM_001151933.2
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *|||||||*||||||||||||||||
targets:91   UAUACUACAUCCGUUCUCGAAUAUU   115

1.0 Zea mays uncharacterized LOC100278762 (LOC100278762), mRNA NA coding protein psRNATarget
EU975204.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *|||||||*||||||||||||||||
targets:91   UAUACUACAUCCGUUCUCGAAUAUU   115

1.0 Zea mays clone 484326 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU940941.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=||||=|||=||||||||||||||
targets:1725   AGUACUGCCUUCGUUCUCGAAUAUU   1749

2.0 Zea mays clone 1218400 mRNA sequence NA coding protein psRNATarget
AY104299.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *|||||||||||||||||*||||||
targets:1265   UAUACUACCUCCGUUCUCAAAUAUU   1289

1.5 Zea mays PCO075569 mRNA sequence NA coding protein psRNATarget
EU954561.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=||||=|||=||||||||||||||
targets:2152   AGUACUGCCUUCGUUCUCGAAUAUU   2176

2.0 Zea mays clone 1470172 regulatory subunit mRNA, complete cds NA coding protein psRNATarget
NM_001153830.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=||||=|||=||||||||||||||
targets:2152   AGUACUGCCUUCGUUCUCGAAUAUU   2176

2.0 Zea mays regulatory subunit (LOC100280910), mRNA NA coding protein psRNATarget
XM_008645362.2
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=||||=|||=||||||||||||||
targets:2223   AGUACUGCCUUCGUUCUCGAAUAUU   2247

2.0 PREDICTED: Zea mays regulatory subunit (LOC100280910), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008645361.2
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=||||=|||=||||||||||||||
targets:2241   AGUACUGCCUUCGUUCUCGAAUAUU   2265

2.0 PREDICTED: Zea mays regulatory subunit (LOC100280910), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008657123.2
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=|||||||||=||||||||||=||
targets:2352   UGUACUACCUCUGUUCUCGAAUGUU   2376

2.5 PREDICTED: Zea mays uncharacterized LOC100384745 (LOC100384745), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008657122.2
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=|||||||||=||||||||||=||
targets:2375   UGUACUACCUCUGUUCUCGAAUGUU   2399

2.5 PREDICTED: Zea mays uncharacterized LOC100384745 (LOC100384745), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008657121.2
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=|||||||||=||||||||||=||
targets:2448   UGUACUACCUCUGUUCUCGAAUGUU   2472

2.5 PREDICTED: Zea mays uncharacterized LOC100384745 (LOC100384745), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546478.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *||||||||*|||||||||||||||
targets:2916   AAUACUACCCCCGUUCUCGAAUAUU   2940

1.0 PREDICTED: Zea mays uncharacterized LOC100194233 (LOC100194233), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546479.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *||||||||*|||||||||||||||
targets:2916   AAUACUACCCCCGUUCUCGAAUAUU   2940

1.0 PREDICTED: Zea mays uncharacterized LOC100194233 (LOC100194233), transcript variant X2, mRNA NA coding protein psRNATarget
M73828.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  **||=||||||||||=|||||||||
targets:572   ACUAUUACCUCCGUUUUCGAAUAUU   596

1.5 Maize ferredoxin (Fd) isoprotein mRNA, pFD5 NA coding protein psRNATarget
EZ077311.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=|||||||*|||||||||||||||
targets:109   UGUACUACCCCCGUUCUCGAAUAUU   133

1.0 TSA: Zea mays contig12948, mRNA sequence NA coding protein psRNATarget
EU949554.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=||=||=|||||||=|||||||||
targets:396   UGUAUUAUCUCCGUUUUCGAAUAUU   420

2.5 Zea mays clone 424261 mRNA sequence NA coding protein psRNATarget
EU950930.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=|||*|||||||||||||||||||
targets:339   AGUACAACCUCCGUUCUCGAAUAUU   363

0.0 Zea mays clone 660705 mRNA sequence NA coding protein psRNATarget
EZ113277.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=||=||=|||||||=|||||||||
targets:576   UGUAUUAUCUCCGUUUUCGAAUAUU   600

2.5 TSA: Zea mays contig48938, mRNA sequence NA coding protein psRNATarget
AY109049.2
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=||=||=|||||||=|||||||||
targets:449   UGUAUUAUCUCCGUUUUCGAAUAUU   473

2.5 Zea mays PCO094720 mRNA sequence NA coding protein psRNATarget
BT060610.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *||||||||*|||||||=|||||||
targets:1325   UAUACUACCGCCGUUCUUGAAUAUU   1349

2.5 Zea mays full-length cDNA clone ZM_BFb0024C16 mRNA, complete cds NA coding protein psRNATarget
BT042256.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=||||||*||||||||||||||||
targets:843   AGUACUACAUCCGUUCUCGAAUAUU   867

1.0 Zea mays full-length cDNA clone ZM_BFb0181G14 mRNA, complete cds NA coding protein psRNATarget
BT068579.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=||=||=|||||||=|||||||||
targets:1438   UGUAUUAUCUCCGUUUUCGAAUAUU   1462

2.5 Zea mays full-length cDNA clone ZM_BFb0339J04 mRNA, complete cds NA coding protein psRNATarget
BT065511.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=|||*|||||||||||||||||||
targets:1538   AGUACAACCUCCGUUCUCGAAUAUU   1562

0.0 Zea mays full-length cDNA clone ZM_BFb0202I04 mRNA, complete cds NA coding protein psRNATarget
NM_001175535.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=|||*|||||||||||||||||||
targets:1538   AGUACAACCUCCGUUCUCGAAUAUU   1562

0.0 Zea mays uncharacterized LOC100382838 (LOC100382838), mRNA NA coding protein psRNATarget
BT034355.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=||=||=|||||||=|||||||||
targets:1535   UGUAUUAUCUCCGUUUUCGAAUAUU   1559

2.5 Zea mays full-length cDNA clone ZM_BFc0007D11 mRNA, complete cds NA coding protein psRNATarget
NM_001347903.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=||=||=|||||||=|||||||||
targets:1602   UGUAUUAUCUCCGUUUUCGAAUAUU   1626

2.5 Zea mays Sulfoquinovosyl transferase SQD2 (pco094720a), mRNA NA coding protein psRNATarget
BT068416.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=||=||=|||||||=|||||||||
targets:1602   UGUAUUAUCUCCGUUUUCGAAUAUU   1626

2.5 Zea mays full-length cDNA clone ZM_BFb0181F19 mRNA, complete cds NA coding protein psRNATarget
XM_008652607.2
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=||=||=|||||||=|||||||||
targets:1646   UGUAUUAUCUCCGUUUUCGAAUAUU   1670

2.5 PREDICTED: Zea mays Sulfoquinovosyl transferase SQD2 (pco094720a), transcript variant X1, mRNA NA coding protein psRNATarget
BT061377.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=||=||=|||||||=|||||||||
targets:1689   UGUAUUAUCUCCGUUUUCGAAUAUU   1713

2.5 Zea mays full-length cDNA clone ZM_BFb0140P11 mRNA, complete cds NA coding protein psRNATarget
XM_020540634.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=|||*|||||||||||||||||||
targets:1641   AGUACAACCUCCGUUCUCGAAUAUU   1665

0.0 PREDICTED: Zea mays uncharacterized LOC100382838 (LOC100382838), transcript variant X1, mRNA NA coding protein psRNATarget
BT087620.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=||=||=|||||||=|||||||||
targets:1963   UGUAUUAUCUCCGUUUUCGAAUAUU   1987

2.5 Zea mays full-length cDNA clone ZM_BFb0134K18 mRNA, complete cds NA coding protein psRNATarget
XM_008666912.2
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *|||||=*|||||||||||||||||
targets:1755   UAUACUGACUCCGUUCUCGAAUAUU   1779

2.0 PREDICTED: Zea mays LOB domain-containing protein 36 (LOC103643737), mRNA NA coding protein psRNATarget
XM_008660842.2
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *||||||=||||||||||*||||||
targets:3016   AAUACUAUCUCCGUUCUCAAAUAUU   3040

2.5 PREDICTED: Zea mays hypothetical protein (LOC103637791), mRNA NA coding protein psRNATarget
XM_020538407.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *||||||||*|||||||=|||||||
targets:5889   UAUACUACCGCCGUUCUUGAAUAUU   5913

2.5 PREDICTED: Zea mays lysine-specific demethylase 5B (LOC103626493), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008646910.2
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *||||||||*|||||||=|||||||
targets:5912   UAUACUACCGCCGUUCUUGAAUAUU   5936

2.5 PREDICTED: Zea mays lysine-specific demethylase 5B (LOC103626493), transcript variant X2, mRNA NA coding protein psRNATarget
BT041303.1
ncRNA:25   CUA--UGAUGGAGGCAAGAGCUUAUAA   1
  |=|--|=||=|||=|||||||||||||
targets:390   GGUUCAUUAUCUCUGUUCUCGAAUAUU   416

2.0 Zea mays full-length cDNA clone ZM_BFb0333C18 mRNA, complete cds NA coding protein psRNATarget
BT041303.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *|||=||=|*|=|||||||||||||
targets:365   AAUAUUAUCACUGUUCUCGAAUAUU   389

3.0 Zea mays full-length cDNA clone ZM_BFb0333C18 mRNA, complete cds NA coding protein psRNATarget
NM_001156819.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *|||=|||=|||*||||||||||||
targets:795   AAUAUUACUUCCCUUCUCGAAUAUU   819

2.5 Zea mays SWIB/MDM2 domain superfamily protein (pco097858), mRNA NA coding protein psRNATarget
EU966414.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *|||=|||=|||*||||||||||||
targets:795   AAUAUUACUUCCCUUCUCGAAUAUU   819

2.5 Zea mays clone 294304 SWIb domain-containing protein mRNA, complete cds NA coding protein psRNATarget
EU969922.1
ncRNA:25   CU--AUGAUGGAGGCAAGAGCUUAUAA   1
  ||--|||||=||||||||||*||||||
targets:1513   GAGCUACUAUCUCCGUUCUCAAAUAUU   1539

2.5 Zea mays clone 337285 signal peptide peptidase-like 3 mRNA, complete cds NA coding protein psRNATarget
NM_001157753.1
ncRNA:25   CU--AUGAUGGAGGCAAGAGCUUAUAA   1
  ||--|||||=||||||||||*||||||
targets:1513   GAGCUACUAUCUCCGUUCUCAAAUAUU   1539

2.5 Zea mays signal peptide peptidase-like 3 (LOC100284858), mRNA NA coding protein psRNATarget
NM_001165727.1
ncRNA:25   CUA--UGAUGGAGGCAAGAGCUUAUAA   1
  |=|--|=||=|||=|||||||||||||
targets:1722   GGUUCAUUAUCUCUGUUCUCGAAUAUU   1748

2.0 Zea mays PQ-loop repeat family protein / transmembrane family protein (LOC100304285), mRNA NA coding protein psRNATarget
NM_001165727.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *|||=||=|*|=|||||||||||||
targets:1697   AAUAUUAUCACUGUUCUCGAAUAUU   1721

3.0 Zea mays PQ-loop repeat family protein / transmembrane family protein (LOC100304285), mRNA NA coding protein psRNATarget
BT060682.1
ncRNA:25   CUA--UGAUGGAGGCAAGAGCUUAUAA   1
  |=|--|=||=|||=|||||||||||||
targets:1722   GGUUCAUUAUCUCUGUUCUCGAAUAUU   1748

2.0 Zea mays full-length cDNA clone ZM_BFb0033M07 mRNA, complete cds NA coding protein psRNATarget
BT060682.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *|||=||=|*|=|||||||||||||
targets:1697   AAUAUUAUCACUGUUCUCGAAUAUU   1721

3.0 Zea mays full-length cDNA clone ZM_BFb0033M07 mRNA, complete cds NA coding protein psRNATarget
XM_008674820.2
ncRNA:25   CUA--UGAUGGAGGCAAGAGCUUAUAA   1
  |=|--|=||=|||=|||||||||||||
targets:1795   GGUUCAUUAUCUCUGUUCUCGAAUAUU   1821

2.0 PREDICTED: Zea mays PQ-loop repeat family protein / transmembrane family protein (LOC100304285), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008674820.2
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *|||=||=|*|=|||||||||||||
targets:1770   AAUAUUAUCACUGUUCUCGAAUAUU   1794

3.0 PREDICTED: Zea mays PQ-loop repeat family protein / transmembrane family protein (LOC100304285), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008680960.2
ncRNA:25   CU--AUGAUGGAGGCAAGAGCUUAUAA   1
  ||--|||||=||||||||||*||||||
targets:1893   GAGCUACUAUCUCCGUUCUCAAAUAUU   1919

2.5 PREDICTED: Zea mays signal peptide peptidase-like 3 (LOC100284858), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008680966.2
ncRNA:25   CU--AUGAUGGAGGCAAGAGCUUAUAA   1
  ||--|||||=||||||||||*||||||
targets:1881   GAGCUACUAUCUCCGUUCUCAAAUAUU   1907

2.5 PREDICTED: Zea mays signal peptide peptidase-like 3 (LOC100284858), transcript variant X3, mRNA NA coding protein psRNATarget
BT086185.1
ncRNA:25   CU--AUGAUGGAGGCAAGAGCUUAUAA   1
  ||--|||||=||||||||||*||||||
targets:1881   GAGCUACUAUCUCCGUUCUCAAAUAUU   1907

2.5 Zea mays full-length cDNA clone ZM_BFc0127I09 mRNA, complete cds NA coding protein psRNATarget
XM_008680954.1
ncRNA:25   CU--AUGAUGGAGGCAAGAGCUUAUAA   1
  ||--|||||=||||||||||*||||||
targets:1892   GAGCUACUAUCUCCGUUCUCAAAUAUU   1918

2.5 PREDICTED: Zea mays signal peptide peptidase-like 3 (LOC100284858), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008680972.1
ncRNA:25   CU--AUGAUGGAGGCAAGAGCUUAUAA   1
  ||--|||||=||||||||||*||||||
targets:1940   GAGCUACUAUCUCCGUUCUCAAAUAUU   1966

2.5 PREDICTED: Zea mays signal peptide peptidase-like 3 (LOC100284858), transcript variant X4, mRNA NA coding protein psRNATarget
EU952914.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  ***||||=||=||||||||||||||
targets:973   UUAACUAUCUUCGUUCUCGAAUAUU   997

2.0 Zea mays clone 1357151 mRNA sequence NA coding protein psRNATarget
NM_001352895.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  ***||||=||=||||||||||||||
targets:1566   UUAACUAUCUUCGUUCUCGAAUAUU   1590

2.0 Zea mays homeobox-leucine zipper protein HOX23 (LOC103626227), mRNA NA coding protein psRNATarget
EZ104892.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  **||||||||=|*||||||||||||
targets:46   UCUACUACCUUCAUUCUCGAAUAUU   70

2.5 TSA: Zea mays contig40549, mRNA sequence NA coding protein psRNATarget
EZ049723.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  **||||||*|=||||||||||||||
targets:45   AUUACUACAUUCGUUCUCGAAUAUU   69

2.0 TSA: Zea mays contig50841, mRNA sequence NA coding protein psRNATarget
EU965986.1
ncRNA:25   CUAUG--AUGGAGGCAAGAGCUUAUAA   1
  *||=|--|==|||||||||||||||||
targets:759   AAUGCCCUGUCUCCGUUCUCGAAUAUU   785

2.0 Zea mays clone 290591 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_008654524.2
ncRNA:25   CUAUG--AUGGAGGCAAGAGCUUAUAA   1
  *||=|--|==|||||||||||||||||
targets:1084   AAUGCCCUGUCUCCGUUCUCGAAUAUU   1110

2.0 PREDICTED: Zea mays transcription factor UPBEAT1 (LOC100276975), mRNA NA coding protein psRNATarget
EZ113291.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *||||*||||||*||||||||||||
targets:80   AAUACAACCUCCCUUCUCGAAUAUU   104

1.5 TSA: Zea mays contig48952, mRNA sequence NA coding protein psRNATarget
EU968685.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=|||*|=||=||||||||||||||
targets:432   UGUACCAUCUUCGUUCUCGAAUAUU   456

2.0 Zea mays clone 323448 h/ACA ribonucleoprotein complex subunit 3-like protein mRNA, complete cds NA coding protein psRNATarget
EU963041.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=|||*|=||=||||||||||||||
targets:420   UGUACCAUCUUCGUUCUCGAAUAUU   444

2.0 Zea mays clone 256747 h/ACA ribonucleoprotein complex subunit 3-like protein mRNA, complete cds NA coding protein psRNATarget
XM_008675718.2
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *||||||*|||||||*|||||||||
targets:1124   UAUACUAACUCCGUUAUCGAAUAUU   1148

2.5 PREDICTED: Zea mays uncharacterized LOC103650050 (LOC103650050), mRNA NA coding protein psRNATarget
EU968577.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=|||*|=||=||||||||||||||
targets:1242   UGUACCAUCUUCGUUCUCGAAUAUU   1266

2.0 Zea mays clone 322423 h/ACA ribonucleoprotein complex subunit 3-like protein mRNA, complete cds NA coding protein psRNATarget
NM_001157392.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=|||*|=||=||||||||||||||
targets:1242   UGUACCAUCUUCGUUCUCGAAUAUU   1266

2.0 Zea mays h/ACA ribonucleoprotein complex subunit 3-like protein (LOC100284497), mRNA NA coding protein psRNATarget
AY109416.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=||=||=||||*||||||||||||
targets:2444   AGUAUUAUCUCCAUUCUCGAAUAUU   2468

2.5 Zea mays CL694_1 mRNA sequence NA coding protein psRNATarget
EZ054003.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  |*|=|||*|||=|||||||||||||
targets:88   GCUGCUAACUCUGUUCUCGAAUAUU   112

2.0 TSA: Zea mays contig55125, mRNA sequence NA coding protein psRNATarget
NM_001157971.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  ||||-|||=*|||||||||||||||
targets:2248   GAUA-UACUCCCGUUCUCGAAUAUU   2271

2.0 Zea mays zeaxanthin epoxidase (LOC100285076), mRNA NA coding protein psRNATarget
EU970775.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  ||||-|||=*|||||||||||||||
targets:2248   GAUA-UACUCCCGUUCUCGAAUAUU   2271

2.0 Zea mays clone 350572 zeaxanthin epoxidase mRNA, complete cds NA coding protein psRNATarget
EZ091721.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *=|||||*||||*||||||||||||
targets:53   UGUACUAACUCCAUUCUCGAAUAUU   77

2.5 TSA: Zea mays contig27370, mRNA sequence NA coding protein psRNATarget
EZ113652.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *|*||||=|||||*|||||||||||
targets:424   CACACUAUCUCCGAUCUCGAAUAUU   448

2.5 TSA: Zea mays contig49313, mRNA sequence NA coding protein psRNATarget
EU959115.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *|*||||=|||||*|||||||||||
targets:823   CACACUAUCUCCGAUCUCGAAUAUU   847

2.5 Zea mays clone 210460 mRNA sequence NA coding protein psRNATarget
BT037424.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *|*||||=|||||*|||||||||||
targets:917   CACACUAUCUCCGAUCUCGAAUAUU   941

2.5 Zea mays full-length cDNA clone ZM_BFb0168N02 mRNA, complete cds NA coding protein psRNATarget
EU964290.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *|*||||=|||||*|||||||||||
targets:899   CACACUAUCUCCGAUCUCGAAUAUU   923

2.5 Zea mays clone 277675 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001150447.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *|*||||=|||||*|||||||||||
targets:899   CACACUAUCUCCGAUCUCGAAUAUU   923

2.5 Zea mays uncharacterized LOC100276729 (LOC100276729), mRNA NA coding protein psRNATarget
EZ059364.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  *||||*|=||||*||||||||||||
targets:133   UAUACCAUCUCCAUUCUCGAAUAUU   157

2.5 TSA: Zea mays contig60486, mRNA sequence NA coding protein psRNATarget
EU965082.1
ncRNA:25   CUAUG-AUGGAGGCAAGAGCUUAUAA   1
  *||==-|||||||*||||||||||||
targets:1468   CAUGUAUACCUCCAUUCUCGAAUAUU   1493

1.5 Zea mays clone 283672 mRNA sequence NA coding protein psRNATarget
EU956971.1
ncRNA:25   CUAUG-AUGGAGGCAAGAGCUUAUAA   1
  *||==-|||||||*||||||||||||
targets:2270   CAUGUAUACCUCCAUUCUCGAAUAUU   2295

1.5 Zea mays clone 1579127 mRNA sequence NA coding protein psRNATarget
XM_020553254.1
ncRNA:25   CUAUGAUGGAGGCAAGAGCUUAUAA   1
  |*|||||||||*||||||*||||||
targets:686   GCUACUACCUCGGUUCUCAAAUAUU   710

2.5 PREDICTED: Zea mays putative phototropic-resoponsive NPH3 family protein (LOC100278373), transcript variant X3, mRNA NA coding protein psRNATarget
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