Search result

BaseInfo

ncRNA ID	novel_zma_miR8597
Species	Zea mays
Class	miRNA
Genome position	Chr5:116972292-116972453 [+]
Reference genome	RefGen_v4
Source	SRR4237220
Length	21
Mature sequence(if miRNA)	1 - UUCAUUGUUUACUCUACCAAU - 21
Stem-loop(if miRNA)	--                         A      -AC                     A          UAA     UUAU   UUCAUUGUUUACUCUACCAAUAUAU AAGUUU   GUUCUAAUUCAUUCUAUGUUA GAGAUAUAAA   GAGAA    A   ||||||||||||||||||||||||| ||||||   ||||||||||||||||||||| ||||||||||   |||||    U   AAGUAAUAAAUGAGAUGGUUAUAUA UUUAAA   UAAGAUUAAGUAGGAUACAAU CUCUAUAUUU   CUCUU    C UG                         A      ACA                     C          UUC     UUUA
Stem-loop sequence	UUCAUUGUUUACUCUACCAAUAUAUAAAGUUUACGUUCUAAUUCAUUCUAUGUUAAGAGAUAUAAAUAAGAGAAUUAUAUCAUUUUUCUCCUUUUUAUAUCUCCUAACAUAGGAUGAAUUAGAAUACAAAAUUUAAUAUAUUGGUAGAGUAAAUAAUGAAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ070129.1	ncRNA:21   UAACCAUCUCAUUUGUUACUU   1   |**|||=|||||||||||||* targets:92   ACGGGUGGAGUAAACAAUGAU   112 Target Full Sequence	3.0	TSA: Zea mays contig05766, mRNA sequence	NA	coding protein	psRNATarget
AY104415.1	ncRNA:21   UAACCAUCUCAUUUGUUACUU   1   |**|||=|||||||||||||* targets:285   ACGGGUGGAGUAAACAAUGAU   305 Target Full Sequence	3.0	Zea mays PCO131231 mRNA sequence	NA	coding protein	psRNATarget
BT036364.2	ncRNA:21   UAACCAUCUCAUUUGUUACUU   1   |**|||=|||||||||||||* targets:559   ACGGGUGGAGUAAACAAUGAU   579 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0108M17 mRNA, complete cds	NA	coding protein	psRNATarget
BT043090.1	ncRNA:21   UAACCAUCUCAUUUGUUACUU   1   |**|||=|||||||||||||* targets:1525   ACGGGUGGAGUAAACAAUGAU   1545 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0095F17 mRNA, complete cds	NA	coding protein	psRNATarget
BT054916.1	ncRNA:21   UAACCAUCUCAUUUGUUACUU   1   |**|||=|||||||||||||* targets:1620   ACGGGUGGAGUAAACAAUGAU   1640 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0181A17 mRNA, complete cds	NA	coding protein	psRNATarget
EU970792.1	ncRNA:21   UAACCAUCUCAUUUGUUACUU   1   |**|||=|||||||||||||* targets:1540   ACGGGUGGAGUAAACAAUGAU   1560 Target Full Sequence	3.0	Zea mays clone 350916 myb-like DNA-binding domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001157976.1	ncRNA:21   UAACCAUCUCAUUUGUUACUU   1   |**|||=|||||||||||||* targets:1540   ACGGGUGGAGUAAACAAUGAU   1560 Target Full Sequence	3.0	Zea mays myb domain protein 3r-3 (pco131231), mRNA	NA	coding protein	psRNATarget
XM_020549787.1	ncRNA:21   UAACCAUCUCAUUUGUUACUU   1   |**|||=|||||||||||||* targets:1537   ACGGGUGGAGUAAACAAUGAU   1557 Target Full Sequence	3.0	PREDICTED: Zea mays myb domain protein 3r-3 (pco131231), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674770.2	ncRNA:21   UAACCAUCUCAUUUGUUACUU   1   |**|||=|||||||||||||* targets:1562   ACGGGUGGAGUAAACAAUGAU   1582 Target Full Sequence	3.0	PREDICTED: Zea mays myb domain protein 3r-3 (pco131231), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008674771.2	ncRNA:21   UAACCAUCUCAUUUGUUACUU   1   |**|||=|||||||||||||* targets:1626   ACGGGUGGAGUAAACAAUGAU   1646 Target Full Sequence	3.0	PREDICTED: Zea mays myb domain protein 3r-3 (pco131231), transcript variant X3, mRNA	NA	coding protein	psRNATarget