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BaseInfo

ncRNA ID	novel_zma_miR8596
Species	Zea mays
Class	miRNA
Genome position	Chr5:9128386-9128495 [+]
Reference genome	RefGen_v4
Source	SRR4237220
Length	21
Mature sequence(if miRNA)	90 - CCUCAAUCCACCUCUAACCGA - 110
Stem-loop(if miRNA)	--    U    A  --U      A  A                     CC   UUAA   GGUU GGAG GU   UUGAGG GG UUGGAGGGGAUUAAAUCCUCU  UAU    A   |||| |||| ||   |||||| || |||||||||||||||||||||  |||   CCAA UCUC CA   AACUCC CC AACCUCCCCUAAUUUAGGGGA  AUA    U AG    -    -  CCU      C  A                     AA   UGUU
Stem-loop sequence	GGUUUGGAGAGUUUUGAGGAGGAUUGGAGGGGAUUAAAUCCUCUCCUAUUUAAAUUUGUAUAAAAGGGGAUUUAAUCCCCUCCAAACCCCCUCAAUCCACCUCUAACCGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT054737.1	ncRNA:21   AGCCAAUCUCCACCUAACUCC   1   ||||||||=|||||||||||| targets:114   UCGGUUAGGGGUGGAUUGAGG   134 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0011M02 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020537816.1	ncRNA:21   AGCCAAUCUCCACCUAACUCC   1   *|||||=|||*|||||||||| targets:2139   CCGGUUGGAGCUGGAUUGAGG   2159 Target Full Sequence	2.5	PREDICTED: Zea mays putative pentatricopeptide repeat-containing protein At1g56570 (LOC103625722), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008646116.2	ncRNA:21   AGCCAAUCUCCACCUAACUCC   1   *|||||=|||*|||||||||| targets:2139   CCGGUUGGAGCUGGAUUGAGG   2159 Target Full Sequence	2.5	PREDICTED: Zea mays putative pentatricopeptide repeat-containing protein At1g56570 (LOC103625722), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU972476.1	ncRNA:21   AGCCAAUCUCCACCUAACUCC   1   ||||||*|||||||*|||||| targets:347   UCGGUUUGAGGUGGUUUGAGG   367 Target Full Sequence	2.5	Zea mays clone 381935 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001349836.1	ncRNA:21   AGCCAAUCUCCACCUAACUCC   1   |||*||**||||||||||||| targets:1330   UCGCUUUAAGGUGGAUUGAGG   1350 Target Full Sequence	3.0	Zea mays RNA-binding (RRM/RBD/RNP motifs) family protein (LOC100193774), mRNA	NA	coding protein	psRNATarget
BT036132.1	ncRNA:21   AGCCAAUCUCCACCUAACUCC   1   |||*||**||||||||||||| targets:1387   UCGCUUUAAGGUGGAUUGAGG   1407 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0097H18 mRNA, complete cds	NA	coding protein	psRNATarget
BT036966.1	ncRNA:21   AGCCAAUCUCCACCUAACUCC   1   **|||||*||*|||||||||| targets:114   CAGGUUAUAGUUGGAUUGAGG   134 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0149G11 mRNA, complete cds	NA	coding protein	psRNATarget
BT018066.1	ncRNA:21   AGCCAAUCUCCACCUAACUCC   1   **|||||*||*|||||||||| targets:561   CAGGUUAUAGUUGGAUUGAGG   581 Target Full Sequence	2.5	Zea mays clone EL01N0551A02.c mRNA sequence	NA	coding protein	psRNATarget
XM_008677128.2	ncRNA:21   AGCCAAUCUCCACCUAACUCC   1   **|||||*||*|||||||||| targets:1930   CAGGUUAUAGUUGGAUUGAGG   1950 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g16470 (LOC103651484), mRNA	NA	coding protein	psRNATarget
XM_008677305.2	ncRNA:21   AGCCAAUCUCCACCUAACUCC   1   **|||||*||*|||||||||| targets:2344   CAGGUUAUAGUUGGAUUGAGG   2364 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39530 (LOC103651633), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_008677304.2	ncRNA:21   AGCCAAUCUCCACCUAACUCC   1   **|||||*||*|||||||||| targets:2344   CAGGUUAUAGUUGGAUUGAGG   2364 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39530 (LOC103651633), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_008677303.2	ncRNA:21   AGCCAAUCUCCACCUAACUCC   1   **|||||*||*|||||||||| targets:2344   CAGGUUAUAGUUGGAUUGAGG   2364 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39530 (LOC103651633), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008677300.2	ncRNA:21   AGCCAAUCUCCACCUAACUCC   1   **|||||*||*|||||||||| targets:2344   CAGGUUAUAGUUGGAUUGAGG   2364 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39530 (LOC103651633), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008677299.2	ncRNA:21   AGCCAAUCUCCACCUAACUCC   1   **|||||*||*|||||||||| targets:2344   CAGGUUAUAGUUGGAUUGAGG   2364 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39530 (LOC103651633), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020550608.1	ncRNA:21   AGCCAAUCUCCACCUAACUCC   1   **|||||*||*|||||||||| targets:2344   CAGGUUAUAGUUGGAUUGAGG   2364 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39530 (LOC103651633), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020550609.1	ncRNA:21   AGCCAAUCUCCACCUAACUCC   1   **|||||*||*|||||||||| targets:2344   CAGGUUAUAGUUGGAUUGAGG   2364 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39530 (LOC103651633), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020550607.1	ncRNA:21   AGCCAAUCUCCACCUAACUCC   1   **|||||*||*|||||||||| targets:2344   CAGGUUAUAGUUGGAUUGAGG   2364 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39530 (LOC103651633), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020550610.1	ncRNA:21   AGCCAAUCUCCACCUAACUCC   1   **|||||*||*|||||||||| targets:2344   CAGGUUAUAGUUGGAUUGAGG   2364 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39530 (LOC103651633), transcript variant X6, mRNA	NA	coding protein	psRNATarget