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BaseInfo

ncRNA ID novel_zma_miR8593
Species Zea mays
Class miRNA
Genome position Chr5:73330520-73330575 [+]
Reference genome RefGen_v4
Source SRR4237220
Length 24
Mature sequence(if miRNA) 1 - GCACUCGGCAAAGAACUAAGACCU - 24
Stem-loop(if miRNA) --                 AAG   UGG
  GCACUCGGCAAAGAACU   ACC   G
  |||||||||||||||||   |||
  UGUGAGCCGUUUCUUGA   UGG   C
GA                 AUA   UUA
Stem-loop sequence GCACUCGGCAAAGAACUAAGACCUGGGCAUUGGUAUAAGUUCUUUGCCGAGUGUAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB167488.1
ncRNA:24   UCCAGAAUCAAGAAACGGCUCACG   1
  |||||||=||||||||||||||||
targets:46   AGGUCUUGGUUCUUUGCCGAGUGC   69

1.0 Sequence 5152 from Patent EP2559767 NA coding protein psRNATarget
HI407027.1
ncRNA:24   UCCAGAAUCAAGAAACGGCUCACG   1
  |||||||=||||||||||||||||
targets:46   AGGUCUUGGUUCUUUGCCGAGUGC   69

1.0 Sequence 5152 from Patent EP2074227 NA coding protein psRNATarget
LQ239157.1
ncRNA:24   UCCAGAAUCAAGAAACGGCUCACG   1
  |||||||=||||||||||||||||
targets:46   AGGUCUUGGUUCUUUGCCGAGUGC   69

1.0 Sequence 5152 from Patent EP2985353 NA coding protein psRNATarget
JB167146.1
ncRNA:24   UCCAGAAUCAAGAAACGGCUCACG   1
  *|||*|*=|||||||||||||||=
targets:37   CGGUAUAGGUUCUUUGCCGAGUGU   60

3.0 Sequence 4810 from Patent EP2559767 NA coding protein psRNATarget
LQ238815.1
ncRNA:24   UCCAGAAUCAAGAAACGGCUCACG   1
  *|||*|*=|||||||||||||||=
targets:37   CGGUAUAGGUUCUUUGCCGAGUGU   60

3.0 Sequence 4810 from Patent EP2985353 NA coding protein psRNATarget
HI406685.1
ncRNA:24   UCCAGAAUCAAGAAACGGCUCACG   1
  *|||*|*=|||||||||||||||=
targets:37   CGGUAUAGGUUCUUUGCCGAGUGU   60

3.0 Sequence 4810 from Patent EP2074227 NA coding protein psRNATarget
EZ087925.1
ncRNA:24   UCCAGAAUC-AAGAAACGGCUCACG   1
  =*||*||=|-|||||||||||||||
targets:44   GAGUGUUGGCUUCUUUGCCGAGUGC   68

3.0 TSA: Zea mays contig23571, mRNA sequence NA coding protein psRNATarget
HI406962.1
ncRNA:24   UCCAGAAUCAAGAAACGGCUCACG   1
  *|||*|*=|||||||||||||||=
targets:174   CGGUAUAGGUUCUUUGCCGAGUGU   197

3.0 Sequence 5087 from Patent EP2074227 NA coding protein psRNATarget
JB167423.1
ncRNA:24   UCCAGAAUCAAGAAACGGCUCACG   1
  *|||*|*=|||||||||||||||=
targets:174   CGGUAUAGGUUCUUUGCCGAGUGU   197

3.0 Sequence 5087 from Patent EP2559767 NA coding protein psRNATarget
LQ239092.1
ncRNA:24   UCCAGAAUCAAGAAACGGCUCACG   1
  *|||*|*=|||||||||||||||=
targets:174   CGGUAUAGGUUCUUUGCCGAGUGU   197

3.0 Sequence 5087 from Patent EP2985353 NA coding protein psRNATarget
HI408565.1
ncRNA:20   GAAUC-AAGAAACGGCUCACG   1
  |||||-||||||||||||||=
targets:1   CUUAGGUUCUUUGCCGAGUGU   21

3.0 Sequence 6690 from Patent EP2074227 NA coding protein psRNATarget
JB169026.1
ncRNA:20   GAAUC-AAGAAACGGCUCACG   1
  |||||-||||||||||||||=
targets:1   CUUAGGUUCUUUGCCGAGUGU   21

3.0 Sequence 6690 from Patent EP2559767 NA coding protein psRNATarget
LQ240695.1
ncRNA:20   GAAUC-AAGAAACGGCUCACG   1
  |||||-||||||||||||||=
targets:1   CUUAGGUUCUUUGCCGAGUGU   21

3.0 Sequence 6690 from Patent EP2985353 NA coding protein psRNATarget
BT067215.1
ncRNA:24   UCCAGAAUC-AAGAAACGGCUCACG   1
  =*||*||=|-|||||||||||||||
targets:1143   GAGUGUUGGCUUCUUUGCCGAGUGC   1167

3.0 Zea mays full-length cDNA clone ZM_BFb0310H18 mRNA, complete cds NA coding protein psRNATarget
NM_001175109.1
ncRNA:24   UCCAGAAUC-AAGAAACGGCUCACG   1
  =*||*||=|-|||||||||||||||
targets:1280   GAGUGUUGGCUUCUUUGCCGAGUGC   1304

3.0 Zea mays 1-aminocyclopropane-1-carboxylate oxidase2 (cl955_1), mRNA NA coding protein psRNATarget
BT064046.1
ncRNA:24   UCCAGAAUC-AAGAAACGGCUCACG   1
  =*||*||=|-|||||||||||||||
targets:1280   GAGUGUUGGCUUCUUUGCCGAGUGC   1304

3.0 Zea mays full-length cDNA clone ZM_BFc0133L10 mRNA, complete cds NA coding protein psRNATarget
BT042352.1
ncRNA:24   UCCAGAAUCAAGAAACGGCUCACG   1
  |***=||||*|||||||||||||=
targets:1196   AAAAUUUAGCUCUUUGCCGAGUGU   1219

2.0 Zea mays full-length cDNA clone ZM_BFb0207J05 mRNA, complete cds NA coding protein psRNATarget
BT042352.1
ncRNA:24   UCCAGAAUCAAGAAACGGCUCACG   1
  =******||*||||||||||||||
targets:1254   GCAAAGAAGCUCUUUGCCGAGUGC   1277

3.0 Zea mays full-length cDNA clone ZM_BFb0207J05 mRNA, complete cds NA coding protein psRNATarget
NM_001148473.2
ncRNA:24   UCCAGAAUCAAGAAACGGCUCACG   1
  |***=||||*|||||||||||||=
targets:1246   AAAAUUUAGCUCUUUGCCGAGUGU   1269

2.0 Zea mays Protein CHLORORESPIRATORY REDUCTION 6 chloroplastic (si707021b11), mRNA NA coding protein psRNATarget
NM_001148473.2
ncRNA:24   UCCAGAAUCAAGAAACGGCUCACG   1
  =******||*||||||||||||||
targets:1304   GCAAAGAAGCUCUUUGCCGAGUGC   1327

3.0 Zea mays Protein CHLORORESPIRATORY REDUCTION 6 chloroplastic (si707021b11), mRNA NA coding protein psRNATarget
JB167100.1
ncRNA:24   UCCAGAAUCAAGAAACGGCUCACG   1
  ||--|*|=*|||||||||||||||
targets:162   AG--CGUGCUUCUUUGCCGAGUGC   183

3.0 Sequence 4764 from Patent EP2559767 NA coding protein psRNATarget
HI406639.1
ncRNA:24   UCCAGAAUCAAGAAACGGCUCACG   1
  ||--|*|=*|||||||||||||||
targets:162   AG--CGUGCUUCUUUGCCGAGUGC   183

3.0 Sequence 4764 from Patent EP2074227 NA coding protein psRNATarget
LQ238769.1
ncRNA:24   UCCAGAAUCAAGAAACGGCUCACG   1
  ||--|*|=*|||||||||||||||
targets:162   AG--CGUGCUUCUUUGCCGAGUGC   183

3.0 Sequence 4764 from Patent EP2985353 NA coding protein psRNATarget
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