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BaseInfo

ncRNA ID	novel_zma_miR8583
Species	Zea mays
Class	miRNA
Genome position	Chr5:219779367-219779448 [-]
Reference genome	RefGen_v4
Source	SRR4237220;SRR4237223;SRR4237226
Length	21
Mature sequence(if miRNA)	1 - UCCCCUCCAAUCCCUCUCAAU - 21
Stem-loop(if miRNA)	--                                      A   UGAGGGGGAUUGGAGGGGAUUUAAUCCCCUCCUAUACA A   ||||||||||||||||||||||||||||||||||||||   ACUCUCCCUAACCUCCCCUAAAUUAGGGGAGGAUAUGU U UA                                      U
Stem-loop sequence	UGAGGGGGAUUGGAGGGGAUUUAAUCCCCUCCUAUACAAAUUUGUAUAGGAGGGGAUUAAAUCCCCUCCAAUCCCUCUCAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020552749.1	ncRNA:21   UAACUCUCCCUAACCUCCCCU   1   *|||||=|||||||||||||| targets:3210   UUUGAGGGGGAUUGGAGGGGA   3230 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103654236 (LOC103654236), mRNA	NA	coding protein	psRNATarget
HI409880.1	ncRNA:21   UAACUCUCCCUAACCUCCCCU   1   ||||||=|||||||||*|||| targets:18   AUUGAGGGGGAUUGGAAGGGA   38 Target Full Sequence	2.5	Sequence 8005 from Patent EP2074227	NA	coding protein	psRNATarget
JB170341.1	ncRNA:21   UAACUCUCCCUAACCUCCCCU   1   ||||||=|||||||||*|||| targets:18   AUUGAGGGGGAUUGGAAGGGA   38 Target Full Sequence	2.5	Sequence 8005 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242010.1	ncRNA:21   UAACUCUCCCUAACCUCCCCU   1   ||||||=|||||||||*|||| targets:18   AUUGAGGGGGAUUGGAAGGGA   38 Target Full Sequence	2.5	Sequence 8005 from Patent EP2985353	NA	coding protein	psRNATarget
LQ239468.1	ncRNA:21   UAACUCUCCCUAACCUCCCCU   1   ||||||=|||||||||*|||| targets:24   AUUGAGGGGGAUUGGAAGGGA   44 Target Full Sequence	2.5	Sequence 5463 from Patent EP2985353	NA	coding protein	psRNATarget
JB167799.1	ncRNA:21   UAACUCUCCCUAACCUCCCCU   1   ||||||=|||||||||*|||| targets:24   AUUGAGGGGGAUUGGAAGGGA   44 Target Full Sequence	2.5	Sequence 5463 from Patent EP2559767	NA	coding protein	psRNATarget
HI407338.1	ncRNA:21   UAACUCUCCCUAACCUCCCCU   1   ||||||=|||||||||*|||| targets:24   AUUGAGGGGGAUUGGAAGGGA   44 Target Full Sequence	2.5	Sequence 5463 from Patent EP2074227	NA	coding protein	psRNATarget
BT054737.1	ncRNA:21   UAACUCUCCCUAACCUCCCCU   1   ||||||=*||||||||||||| targets:128   AUUGAGGAGGAUUGGAGGGGA   148 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0011M02 mRNA, complete cds	NA	coding protein	psRNATarget
BT042029.1	ncRNA:21   UAACUCUCCCUAACCUCCCCU   1   ||||||=||||||||||*||| targets:194   AUUGAGGGGGAUUGGAGAGGA   214 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0114D19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154990.1	ncRNA:21   UAACUCUCCCUAACCUCCCCU   1   ||||||=|||||||||*|||| targets:1193   AUUGAGGGGGAUUGGAAGGGA   1213 Target Full Sequence	2.5	Zea mays CTD small phosphatase-like protein (cl28155_-2), mRNA	NA	coding protein	psRNATarget
EU959460.1	ncRNA:21   UAACUCUCCCUAACCUCCCCU   1   ||||||=|||||||||*|||| targets:1193   AUUGAGGGGGAUUGGAAGGGA   1213 Target Full Sequence	2.5	Zea mays clone 218223 CTD small phosphatase-like protein mRNA, complete cds	NA	coding protein	psRNATarget
BT085111.1	ncRNA:21   UAACUCUCCCUAACCUCCCCU   1   |||||*=|||||||||||||| targets:1278   AUUGAAGGGGAUUGGAGGGGA   1298 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0292J13 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008658561.2	ncRNA:21   UAACUCUCCCUAACCUCCCCU   1   ||||||=|||||||||*|||| targets:242   AUUGAGGGGGAUUGGAAGGGA   262 Target Full Sequence	2.5	PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase 2 (LOC103636208), mRNA	NA	coding protein	psRNATarget
EZ093244.1	ncRNA:21   UAACUCUCCCUAACCUCCCCU   1   *|||||=*||||||||||||| targets:14   UUUGAGGAGGAUUGGAGGGGA   34 Target Full Sequence	2.0	TSA: Zea mays contig28894, mRNA sequence	NA	coding protein	psRNATarget
EZ059519.1	ncRNA:21   UAACUCUCCCUAACCUCCCCU   1   *|||||=|||||||*|||||| targets:433   UUUGAGGGGGAUUGAAGGGGA   453 Target Full Sequence	2.5	TSA: Zea mays contig60641, mRNA sequence	NA	coding protein	psRNATarget
JB169285.1	ncRNA:21   UAACUCUCCCUAACCUCCCCU   1   |||||*|*||||||||||||| targets:32   AUUGAUACGGAUUGGAGGGGA   52 Target Full Sequence	2.0	Sequence 6949 from Patent EP2559767	NA	coding protein	psRNATarget
LQ240954.1	ncRNA:21   UAACUCUCCCUAACCUCCCCU   1   |||||*|*||||||||||||| targets:32   AUUGAUACGGAUUGGAGGGGA   52 Target Full Sequence	2.0	Sequence 6949 from Patent EP2985353	NA	coding protein	psRNATarget
HI408824.1	ncRNA:21   UAACUCUCCCUAACCUCCCCU   1   |||||*|*||||||||||||| targets:32   AUUGAUACGGAUUGGAGGGGA   52 Target Full Sequence	2.0	Sequence 6949 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020538899.1	ncRNA:21   UAACUCUCCCUAACCUCCCCU   1   *|||=||*||||||||||||| targets:2707   UUUGGGAAGGAUUGGAGGGGA   2727 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100279199 (LOC100279199), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU951312.1	ncRNA:21   UAACUCUCCCUAACCUCCCCU   1   |||||*|*||||||||||||| targets:340   AUUGAUACGGAUUGGAGGGGA   360 Target Full Sequence	2.0	Zea mays clone 695515 mRNA sequence	NA	coding protein	psRNATarget
EU975951.1	ncRNA:21   UAACUCUCCCUAACCUCCCCU   1   |||||*|||||||||||*||| targets:68   AUUGAAAGGGAUUGGAGAGGA   88 Target Full Sequence	2.5	Zea mays clone 506398 mRNA sequence	NA	coding protein	psRNATarget
XM_020538898.1	ncRNA:21   UAACUCUCCCUAACCUCCCCU   1   *|||=||*||||||||||||| targets:4797   UUUGGGAAGGAUUGGAGGGGA   4817 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100279199 (LOC100279199), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AY104043.1	ncRNA:21   UAACUCUCCCUAACCUCCCCU   1   |||||*|*||||||||||||| targets:880   AUUGAUACGGAUUGGAGGGGA   900 Target Full Sequence	2.0	Zea mays PCO145885 mRNA sequence	NA	coding protein	psRNATarget
BT068594.1	ncRNA:21   UAACUCUCCCUAACCUCCCCU   1   |||||*|*||||||||||||| targets:877   AUUGAUACGGAUUGGAGGGGA   897 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0348O14 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001151506.1	ncRNA:21   UAACUCUCCCUAACCUCCCCU   1   |||||*|*||||||||||||| targets:907   AUUGAUACGGAUUGGAGGGGA   927 Target Full Sequence	2.0	Zea mays ER membrane protein complex subunit 7-like protein (pco145885(696)), mRNA	NA	coding protein	psRNATarget
EU972032.1	ncRNA:21   UAACUCUCCCUAACCUCCCCU   1   |||||*|*||||||||||||| targets:907   AUUGAUACGGAUUGGAGGGGA   927 Target Full Sequence	2.0	Zea mays clone 373636 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT068463.1	ncRNA:21   UAACUCUCCCUAACCUCCCCU   1   |||||*|*||||||||||||| targets:1179   AUUGAUACGGAUUGGAGGGGA   1199 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0213N24 mRNA, complete cds	NA	coding protein	psRNATarget
BT067503.1	ncRNA:21   UAACUCUCCCUAACCUCCCCU   1   |||||*|||||||||||||*| targets:844   AUUGAAAGGGAUUGGAGGGAA   864 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0066C23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176181.1	ncRNA:21   UAACUCUCCCUAACCUCCCCU   1   |||||*|||||||||||||*| targets:844   AUUGAAAGGGAUUGGAGGGAA   864 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383533 (LOC100383533), mRNA	NA	coding protein	psRNATarget
XM_020547641.1	ncRNA:21   UAACUCUCCCUAACCUCCCCU   1   ||||||*||||||||||*||| targets:3095   AUUGAGUGGGAUUGGAGUGGA   3115 Target Full Sequence	2.5	PREDICTED: Zea mays U11/U12 small nuclear ribonucleoprotein 48 kDa protein (LOC100279189), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ095217.1	ncRNA:21   UAACUCUCCCUAACCUCCCCU   1   ***|||=|||||||||||||* targets:58   CCAGAGGGGGAUUGGAGGGGU   78 Target Full Sequence	3.0	TSA: Zea mays contig30870, mRNA sequence	NA	coding protein	psRNATarget
XM_020542872.1	ncRNA:21   UAACUCUCCCUAACCUCCCCU   1   ***|||=|||||||||||||* targets:1289   CCAGAGGGGGAUUGGAGGGGU   1309 Target Full Sequence	3.0	PREDICTED: Zea mays LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.3 (LOC103634808), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020540164.1	ncRNA:21   UAACUCUCCCUAACCUCCCCU   1   ***|||=|||||||||||||* targets:1541   CCAGAGGGGGAUUGGAGGGGU   1561 Target Full Sequence	3.0	PREDICTED: Zea mays Cysteine-rich repeat secretory protein 3 (LOC107521955), transcript variant X1, mRNA	NA	coding protein	psRNATarget