Search result

BaseInfo

ncRNA ID novel_zma_miR8581
Species Zea mays
Class miRNA
Genome position Chr5:199240984-199241074 [+]
Reference genome RefGen_v4
Source SRR4237220
Length 21
Mature sequence(if miRNA) 71 - AGGUGGGCAUACUGCCAAUGG - 91
Stem-loop(if miRNA) --C      U C           UCUCGCCGAUCUU      --A U
   UUGGCA U UGUCCACCUCC             GCAGAA   G U
   |||||| | |||||||||||             ||||||   |
   AACCGU A ACGGGUGGAGG             UGUCUU   C U
GGU      C U           -UUUUUUUUACGU      GAC A
Stem-loop sequence CUUGGCAUUCUGUCCACCUCCUCUCGCCGAUCUUGCAGAAAGUUUACCAGUUCUGUUGCAUUUUUUUUGGAGGUGGGCAUACUGCCAAUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001175876.1
ncRNA:21   GGUAACCGUCAUACGGGUGGA   1
  |||||||||||||||||||||
targets:791   CCAUUGGCAGUAUGCCCACCU   811

0.0 Zea mays uncharacterized LOC100383214 (LOC100383214), mRNA NA coding protein psRNATarget
BT066604.2
ncRNA:21   GGUAACCGUCAUACGGGUGGA   1
  |||||||||||||||||||||
targets:791   CCAUUGGCAGUAUGCCCACCU   811

0.0 Zea mays full-length cDNA clone ZM_BFb0040F11 mRNA, complete cds NA coding protein psRNATarget
BT087456.1
ncRNA:21   GGUAACCGUCAUACGGGUGGA   1
  **|*||||||*||||||||||
targets:169   GGAGUGGCAGGAUGCCCACCU   189

2.5 Zea mays full-length cDNA clone ZM_BFb0083F08 mRNA, complete cds NA coding protein psRNATarget
EU960454.1
ncRNA:21   GGUAACCGUCAUACGGGUGGA   1
  **|*||||||*||||||||||
targets:181   GGAGUGGCAGGAUGCCCACCU   201

2.5 Zea mays clone 225012 PNT1 mRNA, complete cds NA coding protein psRNATarget
NM_001138939.1
ncRNA:21   GGUAACCGUCAUACGGGUGGA   1
  **|*||||||*||||||||||
targets:155   GGAGUGGCAGGAUGCCCACCU   175

2.5 Zea mays PNT1 (LOC100193858), mRNA NA coding protein psRNATarget
BT036234.1
ncRNA:21   GGUAACCGUCAUACGGGUGGA   1
  **|*||||||*||||||||||
targets:155   GGAGUGGCAGGAUGCCCACCU   175

2.5 Zea mays full-length cDNA clone ZM_BFb0101P15 mRNA, complete cds NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.