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BaseInfo

ncRNA ID novel_zma_miR8579
Species Zea mays
Class miRNA
Genome position Chr4:157728395-157728481 [+]
Reference genome RefGen_v4
Source SRR4237220;SRR4237222
Length 21
Mature sequence(if miRNA) 67 - AGGUGGGCAUACUGCCAAUGG - 87
Stem-loop(if miRNA) --C      U C           CUUCUU     -UCUU     
   UUGGCA U UGUCCACCUCC      GACGA     GCAGAA
   |||||| | |||||||||||      |||||     |||||A
   AACCGU A ACGGGUGGAGG      UUGUU     CGUUUG
GGU      C U           -UUUGU     UUUUU     
Stem-loop sequence CUUGGCAUUCUGUCCACCUCCCUUCUUGACGAUCUUGCAGAAAGUUUGCUUUUUUUGUUUGUUUGGAGGUGGGCAUACUGCCAAUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001175876.1
ncRNA:21   GGUAACCGUCAUACGGGUGGA   1
  |||||||||||||||||||||
targets:791   CCAUUGGCAGUAUGCCCACCU   811

0.0 Zea mays uncharacterized LOC100383214 (LOC100383214), mRNA NA coding protein psRNATarget
BT066604.2
ncRNA:21   GGUAACCGUCAUACGGGUGGA   1
  |||||||||||||||||||||
targets:791   CCAUUGGCAGUAUGCCCACCU   811

0.0 Zea mays full-length cDNA clone ZM_BFb0040F11 mRNA, complete cds NA coding protein psRNATarget
BT087456.1
ncRNA:21   GGUAACCGUCAUACGGGUGGA   1
  **|*||||||*||||||||||
targets:169   GGAGUGGCAGGAUGCCCACCU   189

2.5 Zea mays full-length cDNA clone ZM_BFb0083F08 mRNA, complete cds NA coding protein psRNATarget
EU960454.1
ncRNA:21   GGUAACCGUCAUACGGGUGGA   1
  **|*||||||*||||||||||
targets:181   GGAGUGGCAGGAUGCCCACCU   201

2.5 Zea mays clone 225012 PNT1 mRNA, complete cds NA coding protein psRNATarget
NM_001138939.1
ncRNA:21   GGUAACCGUCAUACGGGUGGA   1
  **|*||||||*||||||||||
targets:155   GGAGUGGCAGGAUGCCCACCU   175

2.5 Zea mays PNT1 (LOC100193858), mRNA NA coding protein psRNATarget
BT036234.1
ncRNA:21   GGUAACCGUCAUACGGGUGGA   1
  **|*||||||*||||||||||
targets:155   GGAGUGGCAGGAUGCCCACCU   175

2.5 Zea mays full-length cDNA clone ZM_BFb0101P15 mRNA, complete cds NA coding protein psRNATarget
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