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BaseInfo

ncRNA ID novel_zma_miR8578
Species Zea mays
Class miRNA
Genome position Chr4:115368382-115368437 [+]
Reference genome RefGen_v4
Source SRR4237220
Length 24
Mature sequence(if miRNA) 33 - CGUUCUUGGGGAGCCUAUUGACAA - 56
Stem-loop(if miRNA) --        A   A   UC     AAU
  GUCGGUGG GCU CUC  GGACG   U
  |||||||| ||| |||  |||||   U
  CAGUUAUC CGA GGG  CUUGC   U
AA        -   G   UU     AAU
Stem-loop sequence GUCGGUGGAGCUACUCUCGGACGAAUUUUUAACGUUCUUGGGGAGCCUAUUGACAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ059372.1
ncRNA:24   AACAGUUAUCCGAGGGGUUCUUGC   1
  ||||||||||||||||||||||||
targets:1604   UUGUCAAUAGGCUCCCCAAGAACG   1627

0.0 TSA: Zea mays contig60494, mRNA sequence NA coding protein psRNATarget
BT083907.2
ncRNA:24   AACAGUUAUCCGAGGGGUUCUUGC   1
  **|||*|||||||||||||||||*
targets:561   AAGUCCAUAGGCUCCCCAAGAACU   584

2.0 Zea mays full-length cDNA clone ZM_BFb0053I18 mRNA, complete cds NA coding protein psRNATarget
BT087174.2
ncRNA:24   AACAGUUAUCCGAGGGGUUCUUGC   1
  **|||*|||||||||||||||||*
targets:561   AAGUCCAUAGGCUCCCCAAGAACU   584

2.0 Zea mays full-length cDNA clone ZM_BFb0233G15 mRNA, complete cds NA coding protein psRNATarget