Search result

BaseInfo

ncRNA ID	novel_zma_miR8577
Species	Zea mays
Class	miRNA
Genome position	Chr10:106035133-106035226 [-]
Reference genome	RefGen_v4
Source	SRR4237220;SRR5100255
Length	24
Mature sequence(if miRNA)	1 - AAUCCCCCUCAAUUCAUAUGGAUU - 24
Stem-loop(if miRNA)	--       AG    GA  AGAU     AGGAUUAGAAGAAAUUUUAA   UCCAUAU  AUUG  GG    UAAUA                    C   |||||||  ||||  ||    |||||   AGGUAUA  UAAC  CC    UAACU                    U UU       CU    UC  --CC     CACUUAAAGUUAUGUAUUAU
Stem-loop sequence	UCCAUAUAGAUUGGAGGAGAUUAAUAAGGAUUAGAAGAAAUUUUAACUUAUUAUGUAUUGAAAUUCACUCAAUCCCCCUCAAUUCAUAUGGAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001348011.1	ncRNA:24   UUAGGUAUACUUAACUCCCCCUAA   1   ||||||||||=||||||||||||| targets:375   AAUCCAUAUGGAUUGAGGGGGAUU   398 Target Full Sequence	1.0	Zea mays hypothetical protein (LOC100277538), mRNA	NA	coding protein	psRNATarget
EU972046.1	ncRNA:24   UUAGGUAUACUUAACUCCCCCUAA   1   ||||||||||=||||||||||||| targets:714   AAUCCAUAUGGAUUGAGGGGGAUU   737 Target Full Sequence	1.0	Zea mays clone 373861 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020548080.1	ncRNA:24   UUAGGUAUACUUAACUCCCCCUAA   1   ||||||||||=||||||||||||| targets:977   AAUCCAUAUGGAUUGAGGGGGAUU   1000 Target Full Sequence	1.0	PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA	NA	coding protein	psRNATarget
BT055467.1	ncRNA:24   UUAGGUAUACUUAACUCCCCCUAA   1   ||||||||||=||||||||||||| targets:1015   AAUCCAUAUGGAUUGAGGGGGAUU   1038 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds	NA	coding protein	psRNATarget
EU956568.1	ncRNA:24   UUAGGUAUACUUAACUCCCCCUAA   1   ||||||||||=||||||||||||| targets:1560   AAUCCAUAUGGAUUGAGGGGGAUU   1583 Target Full Sequence	1.0	Zea mays clone 1566799 mRNA sequence	NA	coding protein	psRNATarget
EU956028.1	ncRNA:24   UUAGGUAUACUUAACUCCCCCUAA   1   |||||||||||||||||*|||||| targets:1473   AAUCCAUAUGAAUUGAGUGGGAUU   1496 Target Full Sequence	1.5	Zea mays clone 1555850 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT062929.1	ncRNA:24   UUAGGUAUACUUAACUCCCCCUAA   1   |||||||||||||||||*|||||| targets:1562   AAUCCAUAUGAAUUGAGUGGGAUU   1585 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0008K15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147345.1	ncRNA:24   UUAGGUAUACUUAACUCCCCCUAA   1   |||||||||||||||||*|||||| targets:1663   AAUCCAUAUGAAUUGAGUGGGAUU   1686 Target Full Sequence	1.5	Zea mays uncharacterized LOC100272892 (LOC100272892), mRNA	NA	coding protein	psRNATarget
BT039694.1	ncRNA:24   UUAGGUAUACUUAACUCCCCCUAA   1   |||||||||||||||||*|||||| targets:1663   AAUCCAUAUGAAUUGAGUGGGAUU   1686 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0039F21 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008654469.2	ncRNA:24   UUAGGUAUACUUAACUCCCCCUAA   1   ||||||||||*||||||||||||| targets:3050   AAUCCAUAUGUAUUGAGGGGGAUU   3073 Target Full Sequence	1.0	PREDICTED: Zea mays U-box domain-containing protein 35 (LOC103632728), mRNA	NA	coding protein	psRNATarget
LQ238773.1	ncRNA:24   UUAGGUAUACUUAACUCCCCCUAA   1   ||||||||||=||||||||*|||| targets:28   AAUCCAUAUGGAUUGAGGGAGAUU   51 Target Full Sequence	2.5	Sequence 4768 from Patent EP2985353	NA	coding protein	psRNATarget
JB167104.1	ncRNA:24   UUAGGUAUACUUAACUCCCCCUAA   1   ||||||||||=||||||||*|||| targets:28   AAUCCAUAUGGAUUGAGGGAGAUU   51 Target Full Sequence	2.5	Sequence 4768 from Patent EP2559767	NA	coding protein	psRNATarget
HI406643.1	ncRNA:24   UUAGGUAUACUUAACUCCCCCUAA   1   ||||||||||=||||||||*|||| targets:28   AAUCCAUAUGGAUUGAGGGAGAUU   51 Target Full Sequence	2.5	Sequence 4768 from Patent EP2074227	NA	coding protein	psRNATarget
HI405956.1	ncRNA:24   UUAGGUAUACUUAACUCCCCCUAA   1   ||||||||||=||||||*|||||| targets:4   AAUCCAUAUGGAUUGAGUGGGAUU   27 Target Full Sequence	2.5	Sequence 4081 from Patent EP2074227	NA	coding protein	psRNATarget
JB166417.1	ncRNA:24   UUAGGUAUACUUAACUCCCCCUAA   1   ||||||||||=||||||*|||||| targets:4   AAUCCAUAUGGAUUGAGUGGGAUU   27 Target Full Sequence	2.5	Sequence 4081 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238086.1	ncRNA:24   UUAGGUAUACUUAACUCCCCCUAA   1   ||||||||||=||||||*|||||| targets:4   AAUCCAUAUGGAUUGAGUGGGAUU   27 Target Full Sequence	2.5	Sequence 4081 from Patent EP2985353	NA	coding protein	psRNATarget
EZ068230.1	ncRNA:24   UUAGGUAUACUUAACUCCCCCUAA   1   ||||||||||=|||*||||||||| targets:50   AAUCCAUAUGGAUUUAGGGGGAUU   73 Target Full Sequence	2.5	TSA: Zea mays contig03865, mRNA sequence	NA	coding protein	psRNATarget
XM_020549355.1	ncRNA:24   UUAGGUAUACUUAACUCCCCCUAA   1   ||||||||||=||||||||||*|| targets:869   AAUCCAUAUGGAUUGAGGGGGUUU   892 Target Full Sequence	2.5	PREDICTED: Zea mays succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial (LOC109944584), mRNA	NA	coding protein	psRNATarget
XM_020539810.1	ncRNA:24   UUAGGUAUACUUAACUCCCCCUAA   1   ||||||||||=||||||||||*|| targets:640   AAUCCAUAUGGAUUGAGGGGGUUU   663 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109940330 (LOC109940330), mRNA	NA	coding protein	psRNATarget
XM_008672211.2	ncRNA:24   UUAGGUAUACUUAACUCCCCCUAA   1   ||||||||||=||||||||||*|| targets:901   AAUCCAUAUGGAUUGAGGGGGUUU   924 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100277216 (LOC100277216), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020548987.1	ncRNA:24   UUAGGUAUACUUAACUCCCCCUAA   1   ||||||||||=||||||||||*|| targets:1920   AAUCCAUAUGGAUUGAGGGGGUUU   1943 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA	NA	coding protein	psRNATarget
XM_008673290.2	ncRNA:24   UUAGGUAUACUUAACUCCCCCUAA   1   ||||||||||=||||||||||*|| targets:1920   AAUCCAUAUGGAUUGAGGGGGUUU   1943 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA	NA	coding protein	psRNATarget
XM_008672210.2	ncRNA:24   UUAGGUAUACUUAACUCCCCCUAA   1   ||||||||||=||||||||||*|| targets:1693   AAUCCAUAUGGAUUGAGGGGGUUU   1716 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100277216 (LOC100277216), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008680349.2	ncRNA:24   UUAGGUAUACUUAACUCCCCCUAA   1   ||||||||||=|||||*||||||| targets:1899   AAUCCAUAUGGAUUGAAGGGGAUU   1922 Target Full Sequence	2.5	PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008680349.2	ncRNA:24   UUAGGUAUACUUAACUCCCCCUAA   1   =||=*|||*|=||||||||||||| targets:1919   GAUUGAUACGGAUUGAGGGGGAUU   1942 Target Full Sequence	2.0	PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008658561.2	ncRNA:24   UUAGGUAUACUUAACUCCCCCUAA   1   |||||||||*=||||||||||||| targets:231   AAUCCAUAUAGAUUGAGGGGGAUU   254 Target Full Sequence	2.0	PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase 2 (LOC103636208), mRNA	NA	coding protein	psRNATarget
XM_008648001.2	ncRNA:24   UUAGGUAUACUUAACUCCCCCUAA   1   ||||||||||=|||||*||||||| targets:3971   AAUCCAUAUGGAUUGAAGGGGAUU   3994 Target Full Sequence	2.5	PREDICTED: Zea mays DExH-box ATP-dependent RNA helicase DExH15 chloroplastic (LOC103627701), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008648000.2	ncRNA:24   UUAGGUAUACUUAACUCCCCCUAA   1   ||||||||||=|||||*||||||| targets:4065   AAUCCAUAUGGAUUGAAGGGGAUU   4088 Target Full Sequence	2.5	PREDICTED: Zea mays DExH-box ATP-dependent RNA helicase DExH15 chloroplastic (LOC103627701), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546944.1	ncRNA:24   UUAGGUAUACUUAACUCCCCCUAA   1   |||||||=*|=||||||||||||| targets:602   AAUCCAUGGGGAUUGAGGGGGAUU   625 Target Full Sequence	3.0	PREDICTED: Zea mays cytochrome b5-like (LOC109943550), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020546943.1	ncRNA:24   UUAGGUAUACUUAACUCCCCCUAA   1   |||||||=*|=||||||||||||| targets:659   AAUCCAUGGGGAUUGAGGGGGAUU   682 Target Full Sequence	3.0	PREDICTED: Zea mays cytochrome b5-like (LOC109943550), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU947467.1	ncRNA:24   UUAG-GUAUACUUAACUCCCCCUAA   1   ==|=-||||||=||||||||||||| targets:1226   GGUUGCAUAUGGAUUGAGGGGGAUU   1250 Target Full Sequence	1.0	Zea mays clone 343885 mRNA sequence	NA	coding protein	psRNATarget
NM_001323405.1	ncRNA:24   UUAG-GUAUACUUAACUCCCCCUAA   1   ==|=-||||||=||||||||||||| targets:1929   GGUUGCAUAUGGAUUGAGGGGGAUU   1953 Target Full Sequence	1.0	Zea mays SKP1-interacting partner 15-like (LOC103648491), transcript variant 1, mRNA	NA	coding protein	psRNATarget
HI409880.1	ncRNA:24   UUAGGUAUACUUAACUCCCCCUAA   1   ||*|||||*|=||||||||||||| targets:7   AAACCAUAGGGAUUGAGGGGGAUU   30 Target Full Sequence	2.0	Sequence 8005 from Patent EP2074227	NA	coding protein	psRNATarget
JB170341.1	ncRNA:24   UUAGGUAUACUUAACUCCCCCUAA   1   ||*|||||*|=||||||||||||| targets:7   AAACCAUAGGGAUUGAGGGGGAUU   30 Target Full Sequence	2.0	Sequence 8005 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242010.1	ncRNA:24   UUAGGUAUACUUAACUCCCCCUAA   1   ||*|||||*|=||||||||||||| targets:7   AAACCAUAGGGAUUGAGGGGGAUU   30 Target Full Sequence	2.0	Sequence 8005 from Patent EP2985353	NA	coding protein	psRNATarget