Search result

BaseInfo

ncRNA ID	novel_zma_miR8575
Species	Zea mays
Class	miRNA
Genome position	Chr4:49299359-49299511 [+]
Reference genome	RefGen_v4
Source	SRR4237220;SRR4237227;SRR5451003;SRR5451004;SRR2089704
Length	19
Mature sequence(if miRNA)	135 - GGCAGUCUCCUUGGCUAGC - 153
Stem-loop(if miRNA)	--          U    U       U CU     -  CU C     U  -AA GAC    -  GU     C   -  AG G   UAGCCAAGGA GACU GCCUGUG G  GGCCA CG  C CCUCA GC   G   CAUC UC  GUCGA CGA CG  C A   |||||||||| |||| ||||||| |  ||||| ||  | ||||| ||   |   |||| ||  ||||| ||| ||  |   AUCGGUUCCU CUGA CGGGCAC C  CUGGU GC  G GGGGU CG   C   GUAG AG  UAGCU GCU GC  G G CG          -    -       U -U     U  AU U     U  AAG --A    G  AG     A   A  GA C
Stem-loop sequence	UAGCCAAGGAUGACUUGCCUGUGUGCUGGCCACGCUCCCCUCAUGCAAGGACCAUCUCGUGUCGACCGACGAGCGAGCGAGCGAUCGAUCGAUGAGAGGAUGACGAAGCUUGGGGUGUACGUUGGUCUCUCACGGGCAGUCUCCUUGGCUAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT062831.1	ncRNA:19   CGAUCGGUUCCUCUGACGG   1   ||||||||||||||||||| targets:234   GCUAGCCAAGGAGACUGCC   252 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0354L14 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176546.1	ncRNA:19   CGAUCGGUUCCUCUGACGG   1   ||||||||||||||||||| targets:862   GCUAGCCAAGGAGACUGCC   880 Target Full Sequence	0.0	Zea mays uncharacterized LOC100383927 (LOC100383927), mRNA	NA	coding protein	psRNATarget
BT068645.1	ncRNA:19   CGAUCGGUUCCUCUGACGG   1   ||||||||||||||||||| targets:862   GCUAGCCAAGGAGACUGCC   880 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0360A11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152615.1	ncRNA:19   CGAUCGGUUCCUCUGACGG   1   *|||||||||||||||||| targets:452   ACUAGCCAAGGAGACUGCC   470 Target Full Sequence	1.0	Zea mays uncharacterized LOC100279619 (LOC100279619), mRNA	NA	coding protein	psRNATarget
NM_001152615.1	ncRNA:19   CGAUCGGUUCCUCUGACGG   1   *||||||||||||=||||| targets:297   ACUAGCCAAGGAGGCUGCC   315 Target Full Sequence	2.5	Zea mays uncharacterized LOC100279619 (LOC100279619), mRNA	NA	coding protein	psRNATarget
BT054579.1	ncRNA:19   CGAUCGGUUCCUCUGACGG   1   *|||||||||||||||||| targets:452   ACUAGCCAAGGAGACUGCC   470 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0162O11 mRNA, complete cds	NA	coding protein	psRNATarget
BT054579.1	ncRNA:19   CGAUCGGUUCCUCUGACGG   1   *||||||||||||=||||| targets:297   ACUAGCCAAGGAGGCUGCC   315 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0162O11 mRNA, complete cds	NA	coding protein	psRNATarget
JB166264.1	ncRNA:19   CGAUCGGUUCCUCUGACGG   1   *||||||||||||=||||| targets:8   ACUAGCCAAGGAGGCUGCC   26 Target Full Sequence	2.5	Sequence 3928 from Patent EP2559767	NA	coding protein	psRNATarget
LQ237933.1	ncRNA:19   CGAUCGGUUCCUCUGACGG   1   *||||||||||||=||||| targets:8   ACUAGCCAAGGAGGCUGCC   26 Target Full Sequence	2.5	Sequence 3928 from Patent EP2985353	NA	coding protein	psRNATarget
HI405803.1	ncRNA:19   CGAUCGGUUCCUCUGACGG   1   *||||||||||||=||||| targets:8   ACUAGCCAAGGAGGCUGCC   26 Target Full Sequence	2.5	Sequence 3928 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020545766.1	ncRNA:19   CGAUCGGUUCCUCUGACGG   1   |*||||||||||||*|||| targets:2537   GGUAGCCAAGGAGAGUGCC   2555 Target Full Sequence	2.5	PREDICTED: Zea mays probable calcium-transporting ATPase 4, plasma membrane-type (LOC103640660), mRNA	NA	coding protein	psRNATarget