Search result

BaseInfo

ncRNA ID novel_zma_miR8574
Species Zea mays
Class miRNA
Genome position Chr4:309768-309812 [-]
Reference genome RefGen_v4
Source SRR4237220
Length 20
Mature sequence(if miRNA) 26 - CUAGAAUCCCUCACUAUUCA - 45
Stem-loop(if miRNA) --C         U         A
   UAGAAUCCC CACUAUUCA A
   ||||||||| |||||||||
   AUCUUAGGG GUGAUGAGU A
CCA         -         U
Stem-loop sequence CUAGAAUCCCUCACUAUUCAAAAUUGAGUAGUGGGGAUUCUAACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008657468.2
ncRNA:20   ACUUAUCACUCCCUAAGAUC   1
  ||||||||||||||||||||
targets:3522   UGAAUAGUGAGGGAUUCUAG   3541

0.0 PREDICTED: Zea mays DExH-box ATP-dependent RNA helicase DExH10 (LOC103634889), mRNA NA coding protein psRNATarget
EU941667.1
ncRNA:20   ACUUAUCACUCCCUAAGAUC   1
  |||||||||||||=||||||
targets:83   UGAAUAGUGAGGGGUUCUAG   102

1.5 Zea mays clone 1468937 mRNA sequence NA coding protein psRNATarget
XM_020546438.1
ncRNA:20   ACUUAUCACUCCCUAAGAUC   1
  |*||||||||||*|||||||
targets:3197   UAAAUAGUGAGGAAUUCUAG   3216

2.5 PREDICTED: Zea mays disease resistance protein RPM1-like (LOC103637688), transcript variant X1, mRNA NA coding protein psRNATarget