Search result

BaseInfo

ncRNA ID	novel_zma_miR8570
Species	Zea mays
Class	miRNA
Genome position	Chr4:87069161-87069278 [-]
Reference genome	RefGen_v4
Source	SRR4237220;SRR4237225
Length	22
Mature sequence(if miRNA)	1 - GCUCACUUCUCUCUCUGUCAGU - 22
Stem-loop(if miRNA)	--       -     -        A      G   A        ---A   -  C   AU      UGACAGA AGAGA GUGAGCAC CAGCGG CAG CUGCAUCG    UCG AU UGC  CCGA   ||||||| ||||| |||||||| |||||| ||| ||||||||    ||| || |||  |||G   ACUGUCU UCUCU CACUCGUG GUCGUC GUC GACGUAGU    AGC UG ACG  GGCA UG       C     U        C      -   -        AGUA   A  C   -C
Stem-loop sequence	UGACAGAAGAGAGUGAGCACACAGCGGGCAGACUGCAUCGAUCGAUCUGCAUCCGAGACGGCGCACGUACGAAUGAUGAUGCAGCUGCUGCUGCGUGCUCACUUCUCUCUCUGUCAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB169044.1	ncRNA:22   UGACUGUCUCUCUCUUCACUCG   1   =||||||||*|||||||||||| targets:8   GCUGACAGAAAGAGAAGUGAGC   29 Target Full Sequence	1.5	Sequence 6708 from Patent EP2559767	NA	coding protein	psRNATarget
LQ240713.1	ncRNA:22   UGACUGUCUCUCUCUUCACUCG   1   =||||||||*|||||||||||| targets:8   GCUGACAGAAAGAGAAGUGAGC   29 Target Full Sequence	1.5	Sequence 6708 from Patent EP2985353	NA	coding protein	psRNATarget
HI408583.1	ncRNA:22   UGACUGUCUCUCUCUUCACUCG   1   =||||||||*|||||||||||| targets:8   GCUGACAGAAAGAGAAGUGAGC   29 Target Full Sequence	1.5	Sequence 6708 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020539323.1	ncRNA:22   UGACUGUCUCUCUCUUCACUCG   1   |**||*||||=||||||||||| targets:191   AGAGAGAGAGGGAGAAGUGAGC   212 Target Full Sequence	2.5	PREDICTED: Zea mays auxin response factor 17 (LOC103629639), mRNA	NA	coding protein	psRNATarget