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BaseInfo

ncRNA ID	novel_zma_miR8558
Species	Zea mays
Class	miRNA
Genome position	Chr4:194307092-194307190 [+]
Reference genome	RefGen_v4
Source	SRR4237220
Length	21
Mature sequence(if miRNA)	79 - UUAUAAUUCCAAACAAACACC - 99
Stem-loop(if miRNA)	--         AA         C GU              ----    AUU   UGUUUGUUU  GAUUAUAAU U  CCAGAUUAUAUAAU    GAGU   A   |||||||||  ||||||||| |  ||||||||||||||    ||||   G   ACAAACAAA  UUAAUAUUA A  GGUCUAAUAUAUUA    UUCA   U CC         CC         U UG              GGUU    AUU
Stem-loop sequence	UGUUUGUUUAAGAUUAUAAUCUGUCCAGAUUAUAUAAUGAGUAUUAGUUUAACUUUUGGAUUAUAUAAUCUGGGUAUAUUAUAAUUCCAAACAAACACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020548752.1	ncRNA:21   CCACAAACAAACCUUAAUAUU   1   |||||||||||||=||||||| targets:16   GGUGUUUGUUUGGGAUUAUAA   36 Target Full Sequence	1.5	PREDICTED: Zea mays putative disease resistance RPP13-like protein 1 (LOC109939242), mRNA	NA	coding protein	psRNATarget
XM_020544030.1	ncRNA:21   CCACAAACAAACCUUAAUAUU   1   |||||||||||||=||||||| targets:1596   GGUGUUUGUUUGGGAUUAUAA   1616 Target Full Sequence	1.5	PREDICTED: Zea mays probable protein phosphatase 2C 58 (LOC103638831), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008661638.2	ncRNA:21   CCACAAACAAACCUUAAUAUU   1   |||||||||||||=||||||| targets:1575   GGUGUUUGUUUGGGAUUAUAA   1595 Target Full Sequence	1.5	PREDICTED: Zea mays probable protein phosphatase 2C 58 (LOC103638831), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001157470.1	ncRNA:21   CCACAAACAAACCUUAAUAUU   1   |||||||||||||=||||||| targets:1119   GGUGUUUGUUUGGGAUUAUAA   1139 Target Full Sequence	1.5	Zea mays hevamine-A (LOC100284575), mRNA	NA	coding protein	psRNATarget
EU968918.1	ncRNA:21   CCACAAACAAACCUUAAUAUU   1   |||||||||||||=||||||| targets:1119   GGUGUUUGUUUGGGAUUAUAA   1139 Target Full Sequence	1.5	Zea mays clone 324969 hevamine-A precursor, mRNA, complete cds	NA	coding protein	psRNATarget
BT062324.1	ncRNA:21   CCACAAACAAACCUUAAUAUU   1   |||||||||||||=||||||| targets:866   GGUGUUUGUUUGGGAUUAUAA   886 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0280F21 mRNA, complete cds	NA	coding protein	psRNATarget
AY106158.1	ncRNA:21   CCACAAACAAACCUUAAUAUU   1   |||||||||||||=||||||| targets:732   GGUGUUUGUUUGGGAUUAUAA   752 Target Full Sequence	1.5	Zea mays PCO109280 mRNA sequence	NA	coding protein	psRNATarget
EU944194.1	ncRNA:21   CCACAAACAAACCUUAAUAUU   1   |||||||||||||=||||||| targets:266   GGUGUUUGUUUGGGAUUAUAA   286 Target Full Sequence	1.5	Zea mays clone 1711585 mRNA sequence	NA	coding protein	psRNATarget
EU948493.1	ncRNA:21   CCACAAACAAACCUUAAUAUU   1   |||||||||||||=||||||| targets:240   GGUGUUUGUUUGGGAUUAUAA   260 Target Full Sequence	1.5	Zea mays clone 378933 mRNA sequence	NA	coding protein	psRNATarget
XM_008648079.2	ncRNA:21   CCACAAACAAACCUUAAUAUU   1   |||||||||||||=||||||* targets:1983   GGUGUUUGUUUGGGAUUAUAU   2003 Target Full Sequence	2.5	PREDICTED: Zea mays galactoside 2-alpha-L-fucosyltransferase (LOC103627780), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ104773.1	ncRNA:21   CCA--CAAACAAACCUUAAUAUU   1   |||--|||||||||||||||||| targets:2   GGUCUGUUUGUUUGGAAUUAUAA   24 Target Full Sequence	2.5	TSA: Zea mays contig40430, mRNA sequence	NA	coding protein	psRNATarget
XM_008657785.2	ncRNA:21   CCACAAACAAACCUUAAUAUU   1   |||||||||||||*||||||| targets:2263   GGUGUUUGUUUGGUAUUAUAA   2283 Target Full Sequence	1.5	PREDICTED: Zea mays LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 (LOC103635294), mRNA	NA	coding protein	psRNATarget
EU971425.1	ncRNA:21   CCACAAACAAACCUUAAUAUU   1   **|||||||||||=||||||| targets:462   CUUGUUUGUUUGGGAUUAUAA   482 Target Full Sequence	1.5	Zea mays clone 364446 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EZ104714.1	ncRNA:21   CCACAAACAAACCUUAAUAUU   1   **|||||||||||=||||||| targets:31   CAUGUUUGUUUGGGAUUAUAA   51 Target Full Sequence	1.5	TSA: Zea mays contig40371, mRNA sequence	NA	coding protein	psRNATarget
EU949179.1	ncRNA:21   CCACAAACAAACCUUAAUAUU   1   ***||||||||||=||||||| targets:13   CUGGUUUGUUUGGGAUUAUAA   33 Target Full Sequence	2.5	Zea mays clone 398195 mRNA sequence	NA	coding protein	psRNATarget
NM_001137382.1	ncRNA:21   CCACAAACAAACCUUAAUAUU   1   **|*|||||||||=||||||| targets:609   CCUUUUUGUUUGGGAUUAUAA   629 Target Full Sequence	2.5	Zea mays uncharacterized LOC100191958 (LOC100191958), mRNA	NA	coding protein	psRNATarget
BT034217.1	ncRNA:21   CCACAAACAAACCUUAAUAUU   1   **|*|||||||||=||||||| targets:609   CCUUUUUGUUUGGGAUUAUAA   629 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0032A11 mRNA, complete cds	NA	coding protein	psRNATarget
EU946672.1	ncRNA:21   CCACAAACAAACCUUAAUAUU   1   ***||||||||||||||*||| targets:1442   AACGUUUGUUUGGAAUUUUAA   1462 Target Full Sequence	2.5	Zea mays clone 321779 mRNA sequence	NA	coding protein	psRNATarget
EU956549.1	ncRNA:21   CCACAAACAAACCUUAAUAUU   1   **|||||*|||||*||||||| targets:852   AAUGUUUAUUUGGCAUUAUAA   872 Target Full Sequence	2.5	Zea mays clone 1565864 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU956533.1	ncRNA:21   CCACAAACAAACCUUAAUAUU   1   **|||||*|||||*||||||| targets:850   AAUGUUUAUUUGGCAUUAUAA   870 Target Full Sequence	2.5	Zea mays clone 1565640 mRNA sequence	NA	coding protein	psRNATarget
EU958118.1	ncRNA:21   CCACAAACAAACCUUAAUAUU   1   **|||||*|||||*||||||| targets:850   AAUGUUUAUUUGGCAUUAUAA   870 Target Full Sequence	2.5	Zea mays clone 1674243 mRNA sequence	NA	coding protein	psRNATarget