Search result

BaseInfo

ncRNA ID	novel_zma_miR8556
Species	Zea mays
Class	miRNA
Genome position	Chr3:151885766-151885900 [+]
Reference genome	RefGen_v4
Source	SRR4237220
Length	24
Mature sequence(if miRNA)	112 - ACCGUCCGCGUCUGAUCAGAGAGC - 135
Stem-loop(if miRNA)	---     CAC    U       U    --   C U U   GC    C      -     AUCA   A   C    UUCUG   CAGG CGCGGAC GUCC  GGC C G GCC  GGAC GUCCGC ACCUG    GAG GUG C    |||||   |||| ||||||| ||||  ||| | | |||  |||| |||||| |||||    ||| |||    GAGAC   GUCU GCGCCUG CAGG  CCG G C CGG  CCUG CAGGCG UGGAC    CUC CGC G CGA     -UA    -       C    CG   U U C   --    C      C     CGCA   -   C
Stem-loop sequence	UUCUGCACCAGGUCGCGGACUGUCCGGCCCUGUGCCGCGGACCGUCCGCACCUGAUCAGAGAGUGCCGCCGCCUCACGCCAGGUCGCGGACCGUCCGGCCCUGUGCCGCGGACCGUCCGCGUCUGAUCAGAGAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU968855.1	ncRNA:24   CGAGAGACUAGUCUGCGCCUGCCA   1   ||||||||=||||||||||||||| targets:686   GCUCUCUGGUCAGACGCGGACGGU   709 Target Full Sequence	1.0	Zea mays clone 324570 mRNA sequence	NA	coding protein	psRNATarget
EU968855.1	ncRNA:24   CGAGAGACUAGUCUGCGCCUGCCA   1   ||||||||=||||=|||||||||| targets:615   GCUCUCUGGUCAGGCGCGGACGGU   638 Target Full Sequence	2.5	Zea mays clone 324570 mRNA sequence	NA	coding protein	psRNATarget
BT061906.1	ncRNA:24   CGAGAGACUAGUCUGCGCCUGCCA   1   ||||||||=||||=|||||||||| targets:178   GCUCUCUGGUCAGGCGCGGACGGU   201 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0196M13 mRNA, complete cds	NA	coding protein	psRNATarget
BT034345.1	ncRNA:24   CGAGAGACUAGUCUGCGCCUGCCA   1   ||||||||=||||=|||||||||| targets:650   GCUCUCUGGUCAGGCGCGGACGGU   673 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0009F02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175289.1	ncRNA:24   CGAGAGACUAGUCUGCGCCUGCCA   1   ||||||||=||||=|||||||||| targets:1668   GCUCUCUGGUCAGGCGCGGACGGU   1691 Target Full Sequence	2.5	Zea mays uncharacterized LOC100382557 (LOC100382557), mRNA	NA	coding protein	psRNATarget
BT064749.1	ncRNA:24   CGAGAGACUAGUCUGCGCCUGCCA   1   ||||||||=||||=|||||||||| targets:1668   GCUCUCUGGUCAGGCGCGGACGGU   1691 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0101G18 mRNA, complete cds	NA	coding protein	psRNATarget