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BaseInfo

ncRNA ID	novel_zma_miR8555
Species	Zea mays
Class	miRNA
Genome position	Chr3:151000205-151000297 [+]
Reference genome	RefGen_v4
Source	SRR4237220
Length	24
Mature sequence(if miRNA)	70 - AGCCGUCGGACAUAAGUUUAUGUC - 93
Stem-loop(if miRNA)	--                     CC  C   CA   -         CC   CAUAAGCUUAUGUCCGACGGU  GC UGC  GCC UCGGAUGUU  A   |||||||||||||||||||||  || |||  ||| |||||||||   GUAUUUGAAUACAGGCUGCCG  UG GCG  CGG AGCCUAUAA  C CU                     -A  A   -C   C         UA
Stem-loop sequence	CAUAAGCUUAUGUCCGACGGUCCGCCUGCCAGCCUCGGAUGUUCCACAUAAUAUCCGACGGCCGCGAGUAGCCGUCGGACAUAAGUUUAUGUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ239089.1	ncRNA:24   CUGUAUUUGAAUACAGGCUGCCGA   1   |||||||=|||||||||*|||||| targets:9   GACAUAAGCUUAUGUCCAACGGCU   32 Target Full Sequence	2.5	Sequence 5084 from Patent EP2985353	NA	coding protein	psRNATarget
HI406959.1	ncRNA:24   CUGUAUUUGAAUACAGGCUGCCGA   1   |||||||=|||||||||*|||||| targets:9   GACAUAAGCUUAUGUCCAACGGCU   32 Target Full Sequence	2.5	Sequence 5084 from Patent EP2074227	NA	coding protein	psRNATarget
JB167420.1	ncRNA:24   CUGUAUUUGAAUACAGGCUGCCGA   1   |||||||=|||||||||*|||||| targets:9   GACAUAAGCUUAUGUCCAACGGCU   32 Target Full Sequence	2.5	Sequence 5084 from Patent EP2559767	NA	coding protein	psRNATarget
HI406938.1	ncRNA:24   CUGUAUUUGAAUACAGGCUGCCGA   1   *||||||=|||||||||*|||||| targets:59   AACAUAAGCUUAUGUCCAACGGCU   82 Target Full Sequence	2.5	Sequence 5063 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239068.1	ncRNA:24   CUGUAUUUGAAUACAGGCUGCCGA   1   *||||||=|||||||||*|||||| targets:59   AACAUAAGCUUAUGUCCAACGGCU   82 Target Full Sequence	2.5	Sequence 5063 from Patent EP2985353	NA	coding protein	psRNATarget
JB167399.1	ncRNA:24   CUGUAUUUGAAUACAGGCUGCCGA   1   *||||||=|||||||||*|||||| targets:59   AACAUAAGCUUAUGUCCAACGGCU   82 Target Full Sequence	2.5	Sequence 5063 from Patent EP2559767	NA	coding protein	psRNATarget
EU944465.1	ncRNA:24   CUGUAUUUGAAUACAGGCUGCCGA   1   *||||||=|||||||||*|||||| targets:187   AACAUAAGCUUAUGUCCAACGGCU   210 Target Full Sequence	2.5	Zea mays clone 219525 mRNA sequence	NA	coding protein	psRNATarget
XM_008671903.2	ncRNA:24   CUGUAUUUGAAUACAGGCUGCCGA   1   |=||*|=||||||*|||||||||| targets:1435   GGCAAAGACUUAUCUCCGACGGCU   1458 Target Full Sequence	2.5	PREDICTED: Zea mays flavonoid 3'-monooxygenase (LOC103647360), mRNA	NA	coding protein	psRNATarget
JB166317.1	ncRNA:24   CUGUAUUUGAAUACAGGCUGCCGA   1   ||*||||=*||||||||||||||* targets:10   GAGAUAAGGUUAUGUCCGACGGCC   33 Target Full Sequence	3.0	Sequence 3981 from Patent EP2559767	NA	coding protein	psRNATarget
LQ237986.1	ncRNA:24   CUGUAUUUGAAUACAGGCUGCCGA   1   ||*||||=*||||||||||||||* targets:10   GAGAUAAGGUUAUGUCCGACGGCC   33 Target Full Sequence	3.0	Sequence 3981 from Patent EP2985353	NA	coding protein	psRNATarget
HI405856.1	ncRNA:24   CUGUAUUUGAAUACAGGCUGCCGA   1   ||*||||=*||||||||||||||* targets:10   GAGAUAAGGUUAUGUCCGACGGCC   33 Target Full Sequence	3.0	Sequence 3981 from Patent EP2074227	NA	coding protein	psRNATarget