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BaseInfo

ncRNA ID	novel_zma_miR8552
Species	Zea mays
Class	miRNA
Genome position	Chr3:7087684-7087766 [+]
Reference genome	RefGen_v4
Source	SRR4237220
Length	21
Mature sequence(if miRNA)	1 - AUGGAGUGGAUUGAGAGGGCU - 21
Stem-loop(if miRNA)	--      U        A   C  G      C         A   AUGGAG GGAUUGAG GGG UA AAUCCC UACUAUUUA U   |||||| |||||||| ||| || |||||| |||||||||   UACCUC CCUAACUC CCC AU UUAGGG GUGAUAAGU U AU      C        -   A  A      A         U
Stem-loop sequence	AUGGAGUGGAUUGAGAGGGCUAGAAUCCCCUACUAUUUAAUUUUGAAUAGUGAGGGAUUAUAACCCCUCAAUCCCCUCCAUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY108800.1	ncRNA:21   UCGGGAGAGUUAGGUGAGGUA   1   ||||||||||||||*|||||| targets:781   AGCCCUCUCAAUCCCCUCCAU   801 Target Full Sequence	1.5	Zea mays PCO127746 mRNA sequence	NA	coding protein	psRNATarget
XM_008645760.2	ncRNA:21   UCGGGAGAGUUAGGUGAGGUA   1   ||||||||||||||*|||||| targets:1468   AGCCCUCUCAAUCCCCUCCAU   1488 Target Full Sequence	1.5	PREDICTED: Zea mays Ubiquitin carboxyl-terminal hydrolase 2 (pco127746), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ077410.1	ncRNA:21   UCGGGAGAGUUAGGUGAGGUA   1   **|||*|||||||||||=||| targets:61   UUCCCCCUCAAUCCACUUCAU   81 Target Full Sequence	2.5	TSA: Zea mays contig13047, mRNA sequence	NA	coding protein	psRNATarget
NM_001149312.1	ncRNA:21   UCGGGAGAGUUAGGUGAGGUA   1   **|||*|||||||||||=||| targets:61   UUCCCCCUCAAUCCACUUCAU   81 Target Full Sequence	2.5	Zea mays uncharacterized LOC100275152 (LOC100275152), mRNA	NA	coding protein	psRNATarget
EU954524.1	ncRNA:21   UCGGGAGAGUUAGGUGAGGUA   1   **|||*|||||||||||=||| targets:61   UUCCCCCUCAAUCCACUUCAU   81 Target Full Sequence	2.5	Zea mays clone 1469353 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008681548.2	ncRNA:21   UCGGGAGAGUUAGGUGAGGUA   1   **|||*|||||||||||=||| targets:69   UUCCCCCUCAAUCCACUUCAU   89 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103654710), mRNA	NA	coding protein	psRNATarget
JB167414.1	ncRNA:21   UCGGGAGAGUUAGGUGAGGUA   1   |*|||*||||||||||||||* targets:4   AACCCACUCAAUCCACUCCAA   24 Target Full Sequence	2.0	Sequence 5078 from Patent EP2559767	NA	coding protein	psRNATarget
HI406953.1	ncRNA:21   UCGGGAGAGUUAGGUGAGGUA   1   |*|||*||||||||||||||* targets:4   AACCCACUCAAUCCACUCCAA   24 Target Full Sequence	2.0	Sequence 5078 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239083.1	ncRNA:21   UCGGGAGAGUUAGGUGAGGUA   1   |*|||*||||||||||||||* targets:4   AACCCACUCAAUCCACUCCAA   24 Target Full Sequence	2.0	Sequence 5078 from Patent EP2985353	NA	coding protein	psRNATarget
BT055408.1	ncRNA:21   UCGGGAGAGUUAGGUGAGGUA   1   |*|||*||||||||||||||* targets:810   AACCCACUCAAUCCACUCCAA   830 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0147G07 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152975.1	ncRNA:21   UCGGGAGAGUUAGGUGAGGUA   1   |*|||*||||||||||||||* targets:810   AACCCACUCAAUCCACUCCAA   830 Target Full Sequence	2.0	Zea mays glycosyltransferase family protein 28 (IDP1988), mRNA	NA	coding protein	psRNATarget
XM_008649521.2	ncRNA:21   UCGGGAGAGUUAGGUGAGGUA   1   |*|||*||||||||||||||* targets:862   AACCCACUCAAUCCACUCCAA   882 Target Full Sequence	2.0	PREDICTED: Zea mays glycosyltransferase family protein 28 (IDP1988), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008649520.2	ncRNA:21   UCGGGAGAGUUAGGUGAGGUA   1   |*|||*||||||||||||||* targets:891   AACCCACUCAAUCCACUCCAA   911 Target Full Sequence	2.0	PREDICTED: Zea mays glycosyltransferase family protein 28 (IDP1988), transcript variant X1, mRNA	NA	coding protein	psRNATarget