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BaseInfo

ncRNA ID	novel_zma_miR8549
Species	Zea mays
Class	miRNA
Genome position	Chr3:65426747-65426804 [-]
Reference genome	RefGen_v4
Source	SRR4237220
Length	24
Mature sequence(if miRNA)	35 - AACACUCGACAAAGAAGGCACACC - 58
Stem-loop(if miRNA)	--               A   ACAC       AACACUCGACAAAGA GGC    CUGGG   ||||||||||||||| |||    ||||C   UUGUGAGCUGUUUCU CCG    GAUCA UG               -   AAAU
Stem-loop sequence	AACACUCGACAAAGAAGGCACACCUGGGCACUAGUAAAGCCUCUUUGUCGAGUGUUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008645204.2	ncRNA:24   CCACACGGAAGAAACAGCUCACAA   1   ****||=|*||||||||||||||* targets:3100   CUACUGUCAUCUUUGUCGAGUGUC   3123 Target Full Sequence	3.0	PREDICTED: Zea mays putative protein of unknown function (DUF640) domain family protein (LOC100278742), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020553261.1	ncRNA:24   CCACACGGAAGAAACAGCUCACAA   1   ****||=|*||||||||||||||* targets:3107   CUACUGUCAUCUUUGUCGAGUGUC   3130 Target Full Sequence	3.0	PREDICTED: Zea mays putative protein of unknown function (DUF640) domain family protein (LOC100278742), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008645203.2	ncRNA:24   CCACACGGAAGAAACAGCUCACAA   1   ****||=|*||||||||||||||* targets:3168   CUACUGUCAUCUUUGUCGAGUGUC   3191 Target Full Sequence	3.0	PREDICTED: Zea mays putative protein of unknown function (DUF640) domain family protein (LOC100278742), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001165647.1	ncRNA:24   CCACACGGAAGAAACAGCUCACAA   1   *******=|||||||||||||||| targets:79   CAAAAAGUUUCUUUGUCGAGUGUU   102 Target Full Sequence	3.0	Zea mays uncharacterized LOC100304195 (LOC100304195), mRNA	NA	coding protein	psRNATarget
BT055423.1	ncRNA:24   CCACACGGAAGAAACAGCUCACAA   1   *******=|||||||||||||||| targets:79   CAAAAAGUUUCUUUGUCGAGUGUU   102 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0179M04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:24   CCACACGGAAGAAACAGCUCACAA   1   *******=|||||||||||||||| targets:2098   CAAAAAGUUUCUUUGUCGAGUGUU   2121 Target Full Sequence	3.0	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
BT054268.1	ncRNA:24   CCACACGGAAGAAACAGCUCACAA   1   *******=|||||||||||||||| targets:2098   CAAAAAGUUUCUUUGUCGAGUGUU   2121 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
EZ058166.1	ncRNA:24   CCACACGGAAGAAACAGCUCACAA   1   **||-||||*=||||||||||||* targets:136   UAUG-GCCUAUUUUGUCGAGUGUC   158 Target Full Sequence	3.0	TSA: Zea mays contig59288, mRNA sequence	NA	coding protein	psRNATarget