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BaseInfo

ncRNA ID	novel_zma_miR8546
Species	Zea mays
Class	miRNA
Genome position	Chr3:123760342-123760425 [-]
Reference genome	RefGen_v4
Source	SRR4237220;SRR2089698
Length	21
Mature sequence(if miRNA)	64 - CCGAGGGGAUCCAUGGGAGAA - 84
Stem-loop(if miRNA)	--C                A  AA    G      UAUU  A    CGAGGGGAUCCAUGGG GA  AAUC UCUUGC    CA A    |||||||||||||||| ||  |||| ||||||    ||    GCUCUCCUAGGUAUCC CU  UUAG GGAAUG    GU A AGA                G  CC    G      UUAU  U
Stem-loop sequence	CCGAGGGGAUCCAUGGGAGAAAAAUCGUCUUGCUAUUCAAAAUUGUAUUGUAAGGGGAUUCCUCGCCUAUGGAUCCUCUCGAGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU958754.1	ncRNA:21   AAGAGGGUACCUAGGGGAGCC   1   *||||||||||||||||||** targets:775   AUCUCCCAUGGAUCCCCUCCA   795 Target Full Sequence	2.5	Zea mays clone 207771 60S ribosomal protein L23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154870.1	ncRNA:21   AAGAGGGUACCUAGGGGAGCC   1   *||||||||||||||||||** targets:775   AUCUCCCAUGGAUCCCCUCCA   795 Target Full Sequence	2.5	Zea mays 60S ribosomal protein L23 (LOC100281952), mRNA	NA	coding protein	psRNATarget
XM_008649119.2	ncRNA:21   AAGAGGGUACCUAGGGGAGCC   1   *||*||||||||||||||=|| targets:13   CUCCCCCAUGGAUCCCCUUGG   33 Target Full Sequence	2.5	PREDICTED: Zea mays PHD transcription factor (PHD35), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT062476.1	ncRNA:21   AAGAGGGUACCUAGGGGAGCC   1   **|||||||||||||=||||* targets:6   GCCUCCCAUGGAUCCUCUCGC   26 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0302P02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174654.1	ncRNA:21   AAGAGGGUACCUAGGGGAGCC   1   **|||||||||||||=||||* targets:6   GCCUCCCAUGGAUCCUCUCGC   26 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100381869), mRNA	NA	coding protein	psRNATarget
EU954900.1	ncRNA:21   AAGAGGGUACCUAGGGGAGCC   1   **|||||||||||||=||||* targets:41   GCCUCCCAUGGAUCCUCUCGC   61 Target Full Sequence	2.5	Zea mays clone 1490906 mRNA sequence	NA	coding protein	psRNATarget
XM_020545246.1	ncRNA:21   AAGAGGGUACCUAGGGGAGCC   1   *||*||||||||||||||*|| targets:130   CUCCCCCAUGGAUCCCCUAGG   150 Target Full Sequence	2.5	PREDICTED: Zea mays methyl binding domain113 (cl26423_1), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008681394.2	ncRNA:21   AAGAGGGUACCUAGGGGAGCC   1   *||*||||||||||||||*|| targets:4488   CUCCCCCAUGGAUCCCCUAGG   4508 Target Full Sequence	2.5	PREDICTED: Zea mays disease resistance protein RPM1-like (LOC103654547), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008681392.2	ncRNA:21   AAGAGGGUACCUAGGGGAGCC   1   *||*||||||||||||||*|| targets:4662   CUCCCCCAUGGAUCCCCUAGG   4682 Target Full Sequence	2.5	PREDICTED: Zea mays disease resistance protein RPM1-like (LOC103654547), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020552825.1	ncRNA:21   AAGAGGGUACCUAGGGGAGCC   1   *||*||||||||||||||*|| targets:4753   CUCCCCCAUGGAUCCCCUAGG   4773 Target Full Sequence	2.5	PREDICTED: Zea mays disease resistance protein RPM1-like (LOC103654547), transcript variant X2, mRNA	NA	coding protein	psRNATarget