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BaseInfo

ncRNA ID	novel_zma_miR8544
Species	Zea mays
Class	miRNA
Genome position	Chr3:168830182-168830250 [-]
Reference genome	RefGen_v4
Source	SRR4237220
Length	24
Mature sequence(if miRNA)	46 - GUUCAUAAAUUGUUAAAUAAGGAA - 69
Stem-loop(if miRNA)	--    A   A          A               GUUC UAA UUGUUAAAUA GGAAACUAAAAUA   |||| ||| |||||||||| ||||||||||||A   CAGG AUU AAUGAUUUAU UCUUUGAUUUUGA AU    G   A          A
Stem-loop sequence	GUUCAUAAAUUGUUAAAUAAGGAAACUAAAAUAAAGUUUUAGUUUCUAUAUUUAGUAAAUUAGGGACUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT019141.1	ncRNA:24   AAGGAAUAAAUUGUUAAAUACUUG   1   |||||||||||||||||||||||| targets:362   UUCCUUAUUUAACAAUUUAUGAAC   385 Target Full Sequence	0.0	Zea mays clone Contig786.F mRNA sequence	NA	coding protein	psRNATarget
LQ238843.1	ncRNA:24   AAGGAAUAAAUUGUUAAAUACUUG   1   |||||||||||||||||||||||| targets:237   UUCCUUAUUUAACAAUUUAUGAAC   260 Target Full Sequence	0.0	Sequence 4838 from Patent EP2985353	NA	coding protein	psRNATarget
HI406713.1	ncRNA:24   AAGGAAUAAAUUGUUAAAUACUUG   1   |||||||||||||||||||||||| targets:237   UUCCUUAUUUAACAAUUUAUGAAC   260 Target Full Sequence	0.0	Sequence 4838 from Patent EP2074227	NA	coding protein	psRNATarget
JB167174.1	ncRNA:24   AAGGAAUAAAUUGUUAAAUACUUG   1   |||||||||||||||||||||||| targets:237   UUCCUUAUUUAACAAUUUAUGAAC   260 Target Full Sequence	0.0	Sequence 4838 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235400.1	ncRNA:24   AAGGAAUAAAUUGUUAAAUACUUG   1   ||||||||||||=||||||||||| targets:63   UUCCUUAUUUAAUAAUUUAUGAAC   86 Target Full Sequence	1.5	Sequence 1395 from Patent EP2985353	NA	coding protein	psRNATarget
JB163731.1	ncRNA:24   AAGGAAUAAAUUGUUAAAUACUUG   1   ||||||||||||=||||||||||| targets:63   UUCCUUAUUUAAUAAUUUAUGAAC   86 Target Full Sequence	1.5	Sequence 1395 from Patent EP2559767	NA	coding protein	psRNATarget
HI403270.1	ncRNA:24   AAGGAAUAAAUUGUUAAAUACUUG   1   ||||||||||||=||||||||||| targets:63   UUCCUUAUUUAAUAAUUUAUGAAC   86 Target Full Sequence	1.5	Sequence 1395 from Patent EP2074227	NA	coding protein	psRNATarget
BT085047.1	ncRNA:24   AAGGAAUAAAUUGUUAAAUACUUG   1   ||||*||||||||||||||||||| targets:1288   UUCCCUAUUUAACAAUUUAUGAAC   1311 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0232J05 mRNA, complete cds	NA	coding protein	psRNATarget
LQ235493.1	ncRNA:24   AAGGAAUAAAUUGUUAAAUACUUG   1   ||||*||||||||||||||||||| targets:63   UUCCCUAUUUAACAAUUUAUGAAC   86 Target Full Sequence	0.0	Sequence 1488 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235521.1	ncRNA:24   AAGGAAUAAAUUGUUAAAUACUUG   1   ||||*||||||||||||||||||| targets:63   UUCCCUAUUUAACAAUUUAUGAAC   86 Target Full Sequence	0.0	Sequence 1516 from Patent EP2985353	NA	coding protein	psRNATarget
HI403391.1	ncRNA:24   AAGGAAUAAAUUGUUAAAUACUUG   1   ||||*||||||||||||||||||| targets:63   UUCCCUAUUUAACAAUUUAUGAAC   86 Target Full Sequence	0.0	Sequence 1516 from Patent EP2074227	NA	coding protein	psRNATarget
JB163909.1	ncRNA:24   AAGGAAUAAAUUGUUAAAUACUUG   1   ||||*||||||||||||||||||| targets:63   UUCCCUAUUUAACAAUUUAUGAAC   86 Target Full Sequence	0.0	Sequence 1573 from Patent EP2559767	NA	coding protein	psRNATarget
JB163852.1	ncRNA:24   AAGGAAUAAAUUGUUAAAUACUUG   1   ||||*||||||||||||||||||| targets:63   UUCCCUAUUUAACAAUUUAUGAAC   86 Target Full Sequence	0.0	Sequence 1516 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235578.1	ncRNA:24   AAGGAAUAAAUUGUUAAAUACUUG   1   ||||*||||||||||||||||||| targets:63   UUCCCUAUUUAACAAUUUAUGAAC   86 Target Full Sequence	0.0	Sequence 1573 from Patent EP2985353	NA	coding protein	psRNATarget
JB163824.1	ncRNA:24   AAGGAAUAAAUUGUUAAAUACUUG   1   ||||*||||||||||||||||||| targets:63   UUCCCUAUUUAACAAUUUAUGAAC   86 Target Full Sequence	0.0	Sequence 1488 from Patent EP2559767	NA	coding protein	psRNATarget
HI403448.1	ncRNA:24   AAGGAAUAAAUUGUUAAAUACUUG   1   ||||*||||||||||||||||||| targets:63   UUCCCUAUUUAACAAUUUAUGAAC   86 Target Full Sequence	0.0	Sequence 1573 from Patent EP2074227	NA	coding protein	psRNATarget
HI403363.1	ncRNA:24   AAGGAAUAAAUUGUUAAAUACUUG   1   ||||*||||||||||||||||||| targets:63   UUCCCUAUUUAACAAUUUAUGAAC   86 Target Full Sequence	0.0	Sequence 1488 from Patent EP2074227	NA	coding protein	psRNATarget
HI403442.1	ncRNA:24   AAGGAAUAAAUUGUUAAAUACUUG   1   |*|||||||||||||||||||||| targets:37   UACCUUAUUUAACAAUUUAUGAAC   60 Target Full Sequence	0.0	Sequence 1567 from Patent EP2074227	NA	coding protein	psRNATarget
JB163903.1	ncRNA:24   AAGGAAUAAAUUGUUAAAUACUUG   1   |*|||||||||||||||||||||| targets:37   UACCUUAUUUAACAAUUUAUGAAC   60 Target Full Sequence	0.0	Sequence 1567 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235547.1	ncRNA:24   AAGGAAUAAAUUGUUAAAUACUUG   1   |*|||||||||||||||||||||| targets:37   UACCUUAUUUAACAAUUUAUGAAC   60 Target Full Sequence	0.0	Sequence 1542 from Patent EP2985353	NA	coding protein	psRNATarget
HI403417.1	ncRNA:24   AAGGAAUAAAUUGUUAAAUACUUG   1   |*|||||||||||||||||||||| targets:37   UACCUUAUUUAACAAUUUAUGAAC   60 Target Full Sequence	0.0	Sequence 1542 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235572.1	ncRNA:24   AAGGAAUAAAUUGUUAAAUACUUG   1   |*|||||||||||||||||||||| targets:37   UACCUUAUUUAACAAUUUAUGAAC   60 Target Full Sequence	0.0	Sequence 1567 from Patent EP2985353	NA	coding protein	psRNATarget
JB163878.1	ncRNA:24   AAGGAAUAAAUUGUUAAAUACUUG   1   |*|||||||||||||||||||||| targets:37   UACCUUAUUUAACAAUUUAUGAAC   60 Target Full Sequence	0.0	Sequence 1542 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008651702.2	ncRNA:24   AAGGAAUAAAUUGUUAAAUACUUG   1   ||||*||||||=|||||||||||| targets:550   UUCCGUAUUUAGCAAUUUAUGAAC   573 Target Full Sequence	1.5	PREDICTED: Zea mays type IV inositol polyphosphate 5-phosphatase 3 (LOC103630655), transcript variant X3, mRNA	NA	coding protein	psRNATarget
LQ235490.1	ncRNA:24   AAGGAAUAAAUUGUUAAAUACUUG   1   ||||*||||||||||||||||||= targets:63   UUCCAUAUUUAACAAUUUAUGAAU   86 Target Full Sequence	1.0	Sequence 1485 from Patent EP2985353	NA	coding protein	psRNATarget
JB163821.1	ncRNA:24   AAGGAAUAAAUUGUUAAAUACUUG   1   ||||*||||||||||||||||||= targets:63   UUCCAUAUUUAACAAUUUAUGAAU   86 Target Full Sequence	1.0	Sequence 1485 from Patent EP2559767	NA	coding protein	psRNATarget
HI403360.1	ncRNA:24   AAGGAAUAAAUUGUUAAAUACUUG   1   ||||*||||||||||||||||||= targets:63   UUCCAUAUUUAACAAUUUAUGAAU   86 Target Full Sequence	1.0	Sequence 1485 from Patent EP2074227	NA	coding protein	psRNATarget
JB163867.1	ncRNA:24   AAGGAAUAAAUUGUUAAAUACUUG   1   ||||*||||||=|||||||||||| targets:62   UUCCCUAUUUAGCAAUUUAUGAAC   85 Target Full Sequence	1.5	Sequence 1531 from Patent EP2559767	NA	coding protein	psRNATarget
HI403406.1	ncRNA:24   AAGGAAUAAAUUGUUAAAUACUUG   1   ||||*||||||=|||||||||||| targets:62   UUCCCUAUUUAGCAAUUUAUGAAC   85 Target Full Sequence	1.5	Sequence 1531 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235536.1	ncRNA:24   AAGGAAUAAAUUGUUAAAUACUUG   1   ||||*||||||=|||||||||||| targets:62   UUCCCUAUUUAGCAAUUUAUGAAC   85 Target Full Sequence	1.5	Sequence 1531 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235561.1	ncRNA:24   AAGGAAUAAAUUGUUAAAUACUUG   1   ||||*||||||||||||||||||* targets:63   UUCCCUAUUUAACAAUUUAUGAAG   86 Target Full Sequence	1.0	Sequence 1556 from Patent EP2985353	NA	coding protein	psRNATarget
HI403431.1	ncRNA:24   AAGGAAUAAAUUGUUAAAUACUUG   1   ||||*||||||||||||||||||* targets:63   UUCCCUAUUUAACAAUUUAUGAAG   86 Target Full Sequence	1.0	Sequence 1556 from Patent EP2074227	NA	coding protein	psRNATarget
JB163892.1	ncRNA:24   AAGGAAUAAAUUGUUAAAUACUUG   1   ||||*||||||||||||||||||* targets:63   UUCCCUAUUUAACAAUUUAUGAAG   86 Target Full Sequence	1.0	Sequence 1556 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235395.1	ncRNA:24   AAGGAAUAAAUUGUUAAAUACUUG   1   ||||*|||||||||||||||*||| targets:63   UUCCCUAUUUAACAAUUUAUAAAC   86 Target Full Sequence	1.5	Sequence 1390 from Patent EP2985353	NA	coding protein	psRNATarget
JB163726.1	ncRNA:24   AAGGAAUAAAUUGUUAAAUACUUG   1   ||||*|||||||||||||||*||| targets:63   UUCCCUAUUUAACAAUUUAUAAAC   86 Target Full Sequence	1.5	Sequence 1390 from Patent EP2559767	NA	coding protein	psRNATarget
HI403265.1	ncRNA:24   AAGGAAUAAAUUGUUAAAUACUUG   1   ||||*|||||||||||||||*||| targets:63   UUCCCUAUUUAACAAUUUAUAAAC   86 Target Full Sequence	1.5	Sequence 1390 from Patent EP2074227	NA	coding protein	psRNATarget
HI406819.1	ncRNA:24   AAGGAAUAAAUUGUUAAAUACUUG   1   ||||*|||||||||||||||*||| targets:45   UUCCCUAUUUAACAAUUUAUAAAC   68 Target Full Sequence	1.5	Sequence 4944 from Patent EP2074227	NA	coding protein	psRNATarget
JB167280.1	ncRNA:24   AAGGAAUAAAUUGUUAAAUACUUG   1   ||||*|||||||||||||||*||| targets:45   UUCCCUAUUUAACAAUUUAUAAAC   68 Target Full Sequence	1.5	Sequence 4944 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238949.1	ncRNA:24   AAGGAAUAAAUUGUUAAAUACUUG   1   ||||*|||||||||||||||*||| targets:45   UUCCCUAUUUAACAAUUUAUAAAC   68 Target Full Sequence	1.5	Sequence 4944 from Patent EP2985353	NA	coding protein	psRNATarget