Search result

BaseInfo

ncRNA ID	novel_zma_miR8543
Species	Zea mays
Class	miRNA
Genome position	Chr10:51326696-51326814 [+]
Reference genome	RefGen_v4
Source	SRR4237220;SRR4237223
Length	24
Mature sequence(if miRNA)	96 - AGGAUUUGAGUUUCUAAACUAGCC - 119
Stem-loop(if miRNA)	--CC      A                  AA          U     A         AA     AGUUUG AAACUCAAAUCCUCUUUA  AUUGGAGGGG AUGAG GGGAAAUUA  U     |||||| ||||||||||||||||||  |||||||||| ||||| |||||||||  U     UCAAAU UUUGAGUUUAGGAGAAGU  UAACCUCCUU UAUUU CUCUUUAAU  U CCGA      C                  CC          U     C         CA
Stem-loop sequence	CCAGUUUGAAAACUCAAAUCCUCUUUAAAAUUGGAGGGGUAUGAGAGGGAAAUUAAAUUUACUAAUUUCUCCUUUAUUUUCCUCCAAUCCUGAAGAGGAUUUGAGUUUCUAAACUAGCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008676335.2	ncRNA:24   CCGAUCAAAUCUUUGAGUUUAGGA   1   |||||||||=|||||||||||||* targets:4310   GGCUAGUUUGGAAACUCAAAUCCC   4333 Target Full Sequence	2.0	PREDICTED: Zea mays Serine/arginine repetitive matrix protein 2 isoform 4 (LOC103650763), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008676333.2	ncRNA:24   CCGAUCAAAUCUUUGAGUUUAGGA   1   |||||||||=|||||||||||||* targets:4297   GGCUAGUUUGGAAACUCAAAUCCC   4320 Target Full Sequence	2.0	PREDICTED: Zea mays Serine/arginine repetitive matrix protein 2 isoform 4 (LOC103650763), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008676336.2	ncRNA:24   CCGAUCAAAUCUUUGAGUUUAGGA   1   |||||||||=|||||||||||||* targets:4283   GGCUAGUUUGGAAACUCAAAUCCC   4306 Target Full Sequence	2.0	PREDICTED: Zea mays Serine/arginine repetitive matrix protein 2 isoform 4 (LOC103650763), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT084379.2	ncRNA:24   CCGAUCAAAUCUUUGAGUUUAGGA   1   |||||||||=|||||||||||||* targets:199   GGCUAGUUUGGAAACUCAAAUCCC   222 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0107D05 mRNA, complete cds	NA	coding protein	psRNATarget
EU941872.1	ncRNA:24   CCGAUCAAAUCUUUGAGUUUAGGA   1   |||||||||=|||||||||||||* targets:31   GGCUAGUUUGGAAACUCAAAUCCC   54 Target Full Sequence	2.0	Zea mays clone 1471472 mRNA sequence	NA	coding protein	psRNATarget
EU940753.1	ncRNA:24   CCGAUCAAAUCUUUGAGUUUAGGA   1   *||||||||=|||||||||||=|| targets:1258   UGCUAGUUUGGAAACUCAAAUUCU   1281 Target Full Sequence	2.5	Zea mays clone 1061976 mRNA sequence	NA	coding protein	psRNATarget
XM_008658575.2	ncRNA:24   CCGAUCAAAUCUUUGAGUUUAGGA   1   |||||||||=|||||||||||*|| targets:1094   GGCUAGUUUGGAAACUCAAAUGCU   1117 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized protein, chloroplastic-like (LOC103636217), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001347002.1	ncRNA:24   CCGAUCAAAUCUUUGAGUUUAGGA   1   |||||||||=|||||||||||*|| targets:1082   GGCUAGUUUGGAAACUCAAAUGCU   1105 Target Full Sequence	2.5	Zea mays uncharacterized protein, chloroplastic-like (LOC103636217), mRNA	NA	coding protein	psRNATarget
XM_020539803.1	ncRNA:24   CCGAUCAAAUCUUUGAGUUUAGGA   1   |||||||||=|||||||||||*|| targets:772   GGCUAGUUUGGAAACUCAAAUGCU   795 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized protein, chloroplastic-like (LOC103636217), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008666766.2	ncRNA:24   CCGAUCAAAUCUUUGAGUUUAGGA   1   *||||||||=|||||||||||||* targets:5276   UGCUAGUUUGGAAACUCAAAUCCC   5299 Target Full Sequence	2.0	PREDICTED: Zea mays protein TIFY 11d (LOC103643602), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546797.1	ncRNA:24   CCGAUCAAAUCUUUGAGUUUAGGA   1   *||||||||=|||||||||||||* targets:5142   UGCUAGUUUGGAAACUCAAAUCCC   5165 Target Full Sequence	2.0	PREDICTED: Zea mays protein TIFY 11d (LOC103643602), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020545649.1	ncRNA:24   CCGAUCAAAUCUUUGAGUUUAGGA   1   |||||||||*|||||||||||||* targets:651   GGCUAGUUUUGAAACUCAAAUCCC   674 Target Full Sequence	2.0	PREDICTED: Zea mays zinc finger BED domain-containing protein DAYSLEEPER-like (LOC109942989), transcript variant X5, mRNA	NA	coding protein	psRNATarget
EU968273.1	ncRNA:24   CCGAUCAAAUCUUUGAGUUUAGGA   1   **|||||||=|||||||||||||* targets:710   CUCUAGUUUGGAAACUCAAAUCCC   733 Target Full Sequence	2.0	Zea mays clone 318071 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU976682.1	ncRNA:24   CCGAUCAAAUCUUUGAGUUUAGGA   1   **|||||||=|||||||||||||* targets:643   CUCUAGUUUGGAAACUCAAAUCCC   666 Target Full Sequence	2.0	Zea mays clone 987107 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT037978.1	ncRNA:24   CCGAUCAAAUCUUUGAGUUUAGGA   1   **|||||||=|||||||||||||* targets:673   CUCUAGUUUGGAAACUCAAAUCCC   696 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0205G16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001301489.1	ncRNA:24   CCGAUCAAAUCUUUGAGUUUAGGA   1   **|||||||=|||||||||||||* targets:673   CUCUAGUUUGGAAACUCAAAUCCC   696 Target Full Sequence	2.0	Zea mays hypothetical protein (LOC103645754), mRNA	NA	coding protein	psRNATarget
XM_008653364.2	ncRNA:24   CCGAUCAAAUCUUUGAGUUUAGGA   1   ||=*=||||||||||||||||||* targets:1   GGUCGGUUUAGAAACUCAAAUCCA   24 Target Full Sequence	1.0	PREDICTED: Zea mays DNA-binding protein (Baf1R-1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU955577.1	ncRNA:24   CCGAUCAAAUCUUUGAGUUUAGGA   1   *||||||||=*||||||||||||* targets:2077   CGCUAGUUUGAAAACUCAAAUCCC   2100 Target Full Sequence	3.0	Zea mays clone 1537616 kelch motif family protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154017.2	ncRNA:24   CCGAUCAAAUCUUUGAGUUUAGGA   1   *||||||||=*||||||||||||* targets:2076   CGCUAGUUUGAAAACUCAAAUCCC   2099 Target Full Sequence	3.0	Zea mays kelch motif family protein (LOC100281098), mRNA	NA	coding protein	psRNATarget