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BaseInfo

ncRNA ID	novel_zma_miR8535
Species	Zea mays
Class	miRNA
Genome position	Chr3:220105661-220105810 [+]
Reference genome	RefGen_v4
Source	SRR4237220;SRR4237221
Length	21
Mature sequence(if miRNA)	130 - UGCCUGUACAAACCAAACACC - 150
Stem-loop(if miRNA)	--         AUA   GAAAAACAAAGUAUAUGUAGAGAGAAAAAAAGAAAACUGAGGUCCUAAGUGGAGUUUCG   UGUUUGGUU   UUG                                                           A   |||||||||   |||   ACAAACCAA   CAU                                                           A CC         --A   GUCCGUUUUGAGUUAAAAUUUAUGGAUCCAAAUGGGUUUUGACACCAUAAAAACCUCAA
Stem-loop sequence	UGUUUGGUUAUAUUGGAAAAACAAAGUAUAUGUAGAGAGAAAAAAAGAAAACUGAGGUCCUAAGUGGAGUUUCGAAAACUCCAAAAAUACCACAGUUUUGGGUAAACCUAGGUAUUUAAAAUUGAGUUUUGCCUGUACAAACCAAACACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT087728.1	ncRNA:21   CCACAAACCAAACAUGUCCGU   1   ||||||||||||||||||*|| targets:1150   GGUGUUUGGUUUGUACAGUCA   1170 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0176C13 mRNA, complete cds	NA	coding protein	psRNATarget
BT087410.1	ncRNA:21   CCACAAACCAAACAUGUCCGU   1   ||||||||||||||||||*|| targets:1187   GGUGUUUGGUUUGUACAGUCA   1207 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0064A09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196687.1	ncRNA:21   CCACAAACCAAACAUGUCCGU   1   ||||||||||||||||||*|| targets:1187   GGUGUUUGGUUUGUACAGUCA   1207 Target Full Sequence	1.5	Zea mays DCD (Development and Cell Death) domain protein (LOC100502210), mRNA	NA	coding protein	psRNATarget
XM_020537671.1	ncRNA:21   CCACAAACCAAA-CAUGUCCGU   1   **||||||||||-||||||||| targets:941   CCUGUUUGGUUUUGUACAGGCA   962 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100276210 (LOC100276210), mRNA	NA	coding protein	psRNATarget
EU965842.1	ncRNA:21   CCACAAACCAAA-CAUGUCCGU   1   **||||||||||-||||||||| targets:837   CCUGUUUGGUUUUGUACAGGCA   858 Target Full Sequence	3.0	Zea mays clone 289321 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU960656.1	ncRNA:21   CCACAAACCAAA-CAUGUCCGU   1   **||||||||||-||||||||| targets:920   CCUGUUUGGUUUUGUACAGGCA   941 Target Full Sequence	3.0	Zea mays clone 227092 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT039014.1	ncRNA:21   CCACAAACCAAACAUGUCCGU   1   **||||||*|||||||||||* targets:498   UUUGUUUGCUUUGUACAGGCU   518 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0351A13 mRNA, complete cds	NA	coding protein	psRNATarget
BT035388.1	ncRNA:21   CCACAAACCAAACAUGUCCGU   1   **||||||*|||||||||||* targets:459   UUUGUUUGCUUUGUACAGGCU   479 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0058M13 mRNA, complete cds	NA	coding protein	psRNATarget
BT041855.2	ncRNA:21   CCACAAACCAAACAUGUCCGU   1   **||||||*|||||||||||* targets:483   UUUGUUUGCUUUGUACAGGCU   503 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0066N19 mRNA, complete cds	NA	coding protein	psRNATarget
EU959639.1	ncRNA:21   CCACAAACCAAACAUGUCCGU   1   **||||||*|||||||||||* targets:482   UUUGUUUGCUUUGUACAGGCU   502 Target Full Sequence	2.5	Zea mays clone 218999 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149932.1	ncRNA:21   CCACAAACCAAACAUGUCCGU   1   **||||||*|||||||||||* targets:482   UUUGUUUGCUUUGUACAGGCU   502 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100276047), mRNA	NA	coding protein	psRNATarget
XM_008674355.2	ncRNA:21   CCACAAACCAAACAUGUCCGU   1   **||||||*|||||||||||* targets:513   UUUGUUUGCUUUGUACAGGCU   533 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100276047), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008674358.2	ncRNA:21   CCACAAACCAAACAUGUCCGU   1   **||||||*|||||||||||* targets:959   UUUGUUUGCUUUGUACAGGCU   979 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100276047), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008674357.2	ncRNA:21   CCACAAACCAAACAUGUCCGU   1   **||||||*|||||||||||* targets:1224   UUUGUUUGCUUUGUACAGGCU   1244 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100276047), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674356.2	ncRNA:21   CCACAAACCAAACAUGUCCGU   1   **||||||*|||||||||||* targets:1396   UUUGUUUGCUUUGUACAGGCU   1416 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100276047), transcript variant X1, mRNA	NA	coding protein	psRNATarget