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BaseInfo

ncRNA ID	novel_zma_miR8534
Species	Zea mays
Class	miRNA
Genome position	Chr2:173886618-173886661 [-]
Reference genome	RefGen_v4
Source	SRR1997865;SRR1997866
Length	21
Mature sequence(if miRNA)	1 - UGAAUAGUAAGAGAUUUUGGC - 21
Stem-loop(if miRNA)	--      UC           A   CAAAAU  UUUACUAUUCA U   ||||||  |||||||||||   GUUUUA  GAAUGAUAAGU U CG      GA           U
Stem-loop sequence	CAAAAUUCUUUACUAUUCAAUUUUGAAUAGUAAGAGAUUUUGGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU944440.1	ncRNA:21   CGGUUUUAGAGAAUGAUAAGU   1   *|||||||=|||||||||||| targets:1051   ACCAAAAUUUCUUACUAUUCA   1071 Target Full Sequence	1.5	Zea mays clone 218592 mRNA sequence	NA	coding protein	psRNATarget
EU962483.1	ncRNA:21   CGGUUUUAGAGAAUGAUAAGU   1   |==||||||*||||||||||| targets:1083   GUUAAAAUCCCUUACUAUUCA   1103 Target Full Sequence	2.5	Zea mays clone 243072 EF hand family protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001155748.1	ncRNA:21   CGGUUUUAGAGAAUGAUAAGU   1   |==||||||*||||||||||| targets:1083   GUUAAAAUCCCUUACUAUUCA   1103 Target Full Sequence	2.5	Zea mays uncharacterized LOC100282842 (gpm256), mRNA	NA	coding protein	psRNATarget
EU968260.1	ncRNA:21   CGGUUUUAGAGAAUGAUAAGU   1   *=|||||||*||||||||||| targets:493   AUCAAAAUCACUUACUAUUCA   513 Target Full Sequence	1.5	Zea mays clone 317786 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EZ108200.1	ncRNA:21   CGGUUUUAGAGAAUGAUAAGU   1   *=|||||||*||||||||||| targets:121   AUCAAAAUCACUUACUAUUCA   141 Target Full Sequence	1.5	TSA: Zea mays contig43858, mRNA sequence	NA	coding protein	psRNATarget
XM_008646230.2	ncRNA:21   CGGUUUUAGAGAAUGAUAAGU   1   |*||||*||||||=||||||| targets:3855   GACAAAUUCUCUUGCUAUUCA   3875 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g21300 (LOC103625830), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008646229.2	ncRNA:21   CGGUUUUAGAGAAUGAUAAGU   1   |*||||*||||||=||||||| targets:3851   GACAAAUUCUCUUGCUAUUCA   3871 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g21300 (LOC103625830), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008646231.2	ncRNA:21   CGGUUUUAGAGAAUGAUAAGU   1   |*||||*||||||=||||||| targets:3848   GACAAAUUCUCUUGCUAUUCA   3868 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g21300 (LOC103625830), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020537845.1	ncRNA:21   CGGUUUUAGAGAAUGAUAAGU   1   |*||||*||||||=||||||| targets:3838   GACAAAUUCUCUUGCUAUUCA   3858 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g21300 (LOC103625830), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008646232.2	ncRNA:21   CGGUUUUAGAGAAUGAUAAGU   1   |*||||*||||||=||||||| targets:3834   GACAAAUUCUCUUGCUAUUCA   3854 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g21300 (LOC103625830), transcript variant X5, mRNA	NA	coding protein	psRNATarget