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BaseInfo

ncRNA ID ath-miRf10093-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 22
Mature sequence(if miRNA) NA - UACUCGACCAGGGGGUCGAGUG - NA
Stem-loop(if miRNA)  UG   A           GG        G      UCGAGUGAUGGUCAUGUGAUGGGGAUGAAGACACUCGACCUCGCGGUCGAGUGGUGA
G  AAG CACUCGACCUU  GGUCGAGU AUGUGA                                                         G
|  ||| |||||||||||  |||||||| ||||||
C  UUU GUGAGCUGGGG  CCAGCUCA CUUCGA                                                         G
 GU   G           GA        U      AGUGUUGGAGUCGUCUGGUGAGCUGGGGGACCAGCUGAUCUCCUGUAGUGGUGAAGU
Stem-loop sequence GUGAAGACACUCGACCUUGGGGUCGAGUGAUGUGAUCGAGUGAUGGUCAUGUGAUGGGGAUGAAGACACUCGACCUCGCGGUCGAGUGGUGAGGUGAAGUGGUGAUGUCCUCUAGUCGACCAGGGGGUCGAGUGGUCUGCUGAGGUUGUGAAGCUUCUACUCGACCAGGGGGUCGAGUGGUUUUGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
DQ069808.1
ncRNA:22   GUGAGCUGGGGGACCAGCUCAU   1
  ||||||||||||||||||||||
targets:91   CACUCGACCCCCUGGUCGAGUA   112

0.0 Arabidopsis thaliana At2g10880 mRNA, partial sequence NA coding protein psRNATarget
BT014714.1
ncRNA:22   GUGAGCUGGGGGACCAGCUCAU   1
  ||||||||||||||||||||||
targets:231   CACUCGACCCCCUGGUCGAGUA   252

0.0 Arabidopsis thaliana At4g05636.1 mRNA sequence NA coding protein psRNATarget
BT014714.1
ncRNA:22   GUGAGCUGGGGGACCAGCUCAU   1
  =|||||||||||||||||||||
targets:182   UACUCGACCCCCUGGUCGAGUA   203

0.0 Arabidopsis thaliana At4g05636.1 mRNA sequence NA coding protein psRNATarget
BT015478.1
ncRNA:22   GUGAGCUGGGGGACCAGCUCAU   1
  ||||||||||||||||||||||
targets:231   CACUCGACCCCCUGGUCGAGUA   252

0.0 Arabidopsis thaliana At4g05636 mRNA sequence NA coding protein psRNATarget
BT015478.1
ncRNA:22   GUGAGCUGGGGGACCAGCUCAU   1
  =|||||||||||||||||||||
targets:182   UACUCGACCCCCUGGUCGAGUA   203

0.0 Arabidopsis thaliana At4g05636 mRNA sequence NA coding protein psRNATarget
EF183192.1
ncRNA:22   GUGAGCUGGGGGACCAGCUCAU   1
  ||||||||||||||||||||||
targets:125   CACUCGACCCCCUGGUCGAGUA   146

0.0 Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence NA coding protein psRNATarget
EF183193.1
ncRNA:22   GUGAGCUGGGGGACCAGCUCAU   1
  ||||||||||||||||||||||
targets:500   CACUCGACCCCCUGGUCGAGUA   521

0.0 Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence NA coding protein psRNATarget
EF183191.1
ncRNA:22   GUGAGCUGGGGGACCAGCUCAU   1
  ||||||||||||||||||||||
targets:500   CACUCGACCCCCUGGUCGAGUA   521

0.0 Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence NA coding protein psRNATarget
EF183042.1
ncRNA:22   GUGAGCUGGGGGACCAGCUCAU   1
  ||||||||||||||||||||||
targets:1572   CACUCGACCCCCUGGUCGAGUA   1593

0.0 Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence NA coding protein psRNATarget
BT025674.1
ncRNA:22   GUGAGCUGGGGGACCAGCUCAU   1
  =|||||||||||||||||||||
targets:309   UACUCGACCCCCUGGUCGAGUA   330

0.0 Arabidopsis thaliana NA coding protein psRNATarget
BT014714.1
ncRNA:22   GUGAGCUGGGGGACCAGCUCAU   1
  =||||*||||||||||||||||
targets:302   UACUCAACCCCCUGGUCGAGUA   323

1.0 Arabidopsis thaliana At4g05636.1 mRNA sequence NA coding protein psRNATarget
BT015478.1
ncRNA:22   GUGAGCUGGGGGACCAGCUCAU   1
  =||||*||||||||||||||||
targets:302   UACUCAACCCCCUGGUCGAGUA   323

1.0 Arabidopsis thaliana At4g05636 mRNA sequence NA coding protein psRNATarget
AY231407.1
ncRNA:22   GUGAGCUGGGGGACCAGCUCAU   1
  =||*||||||||||||||||||
targets:584   UACYCGACCCCCUGGUCGAGUA   605

1.0 Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds NA coding protein psRNATarget
BT025674.1
ncRNA:22   GUGAGCUGGGGGACCAGCUCAU   1
  =|||||||||||*|||||||||
targets:188   UACUCGACCCCCAGGUCGAGUA   209

1.5 Arabidopsis thaliana NA coding protein psRNATarget
AY231407.1
ncRNA:22   GUGAGCUGGGGGACCAGCUCAU   1
  |||||||||||*||||||||||
targets:490   CACUCGACCCCGUGGUCGAGUA   511

1.5 Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds NA coding protein psRNATarget
AY231407.1
ncRNA:22   GUGAGCUGGGGGACCAGCUCAU   1
  |||||||||||*||||||||||
targets:536   CACUCGACCCCAUGGUCGAGUA   557

1.5 Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds NA coding protein psRNATarget
NM_103391.1
ncRNA:22   GUGAGCUGGGGGACCAGCUCAU   1
  ||||||||||||*|||||||||
targets:1105   CACUCGACCCCCAGGUCGAGUA   1126

1.5 Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA DNAse I-like superfamily protein(AT1G40390) coding protein psRNATarget
BT014714.1
ncRNA:22   GUGAGCUGGGGGACCAGCUCAU   1
  =|||||||||||*||||||||=
targets:137   UACUCGACCCCCAGGUCGAGUG   158

2.5 Arabidopsis thaliana At4g05636.1 mRNA sequence NA coding protein psRNATarget
BT015478.1
ncRNA:22   GUGAGCUGGGGGACCAGCUCAU   1
  =|||||||||||*||||||||=
targets:137   UACUCGACCCCCAGGUCGAGUG   158

2.5 Arabidopsis thaliana At4g05636 mRNA sequence NA coding protein psRNATarget
EF183192.1
ncRNA:22   GUGAGCUGGGGGACCAGCUCAU   1
  ||*||*|||||*||||||||||
targets:170   CAGUCAACCCCGUGGUCGAGUA   191

2.5 Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence NA coding protein psRNATarget
EF183193.1
ncRNA:22   GUGAGCUGGGGGACCAGCUCAU   1
  ||*||*|||||*||||||||||
targets:545   CAGUCAACCCCGUGGUCGAGUA   566

2.5 Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence NA coding protein psRNATarget
EF183191.1
ncRNA:22   GUGAGCUGGGGGACCAGCUCAU   1
  ||*||*|||||*||||||||||
targets:545   CAGUCAACCCCGUGGUCGAGUA   566

2.5 Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence NA coding protein psRNATarget
NM_103391.1
ncRNA:22   GUGAGCUGGGGGACCAGCUCAU   1
  |||||||||||*|||||||||=
targets:1210   CACUCGACCCCGUGGUCGAGUG   1231

2.5 Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA DNAse I-like superfamily protein(AT1G40390) coding protein psRNATarget
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