Search result

BaseInfo

ncRNA ID	novel_zma_miR8516
Species	Zea mays
Class	miRNA
Genome position	Chr2:64093546-64093642 [+]
Reference genome	RefGen_v4
Source	SRR4237220
Length	24
Mature sequence(if miRNA)	1 - AAUCCAUAUAGAUUGAAGGGGAUU - 24
Stem-loop(if miRNA)	--         A     A          -      CUAAAUCCCUAGUA   AAUCCAUAU GAUUG AGGGGAUUGG GUGGGU              A   ||||||||| ||||| |||||||||| ||||||   UUAGGUAUA CUAAC UCCCCUAACC UACCUA              G UA         C     C          G      ACCCUCUCUAAACU
Stem-loop sequence	AAUCCAUAUAGAUUGAAGGGGAUUGGGUGGGUCUAAAUCCCUAGUAAGUCAAAUCUCUCCCAAUCCAUGCCAAUCCCCUCCAAUCCAUAUGGAUUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT055069.1	ncRNA:24   UUAGGGGAAGUUAGAUAUACCUAA   1   ||||||||||||||*||||||||| targets:978   AAUCCCCUUCAAUCCAUAUGGAUU   1001 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds	NA	coding protein	psRNATarget
BT041454.1	ncRNA:24   UUAGGGGAAGUUAGAUAUACCUAA   1   ||||||||||||||*||||||||| targets:1499   AAUCCCCUUCAAUCCAUAUGGAUU   1522 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148011.2	ncRNA:24   UUAGGGGAAGUUAGAUAUACCUAA   1   ||||||||||||||*||||||||| targets:1499   AAUCCCCUUCAAUCCAUAUGGAUU   1522 Target Full Sequence	1.5	Zea mays uncharacterized LOC100273594 (AY105910), mRNA	NA	coding protein	psRNATarget
AY105910.1	ncRNA:24   UUAGGGGAAGUUAGAUAUACCUAA   1   ||||||||||||||*||||||||| targets:1485   AAUCCCCUUCAAUCCAUAUGGAUU   1508 Target Full Sequence	1.5	Zea mays PCO106969 mRNA sequence	NA	coding protein	psRNATarget
BT040193.1	ncRNA:24   UUAGGGGAAGUUAGAUAUACCUAA   1   ||||||||||||||*||||||||| targets:1467   AAUCCCCUUCAAUCCAUAUGGAUU   1490 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds	NA	coding protein	psRNATarget
BT064472.1	ncRNA:24   UUAGGGGAAGUUAGAUAUACCUAA   1   ||||||||||||||*||||||||| targets:1423   AAUCCCCUUCAAUCCAUAUGGAUU   1446 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008654469.2	ncRNA:24   UUAGGGGAAGUUAGAUAUACCUAA   1   ||||=|||||||||*||||||||| targets:3122   AAUCUCCUUCAAUCCAUAUGGAUU   3145 Target Full Sequence	1.5	PREDICTED: Zea mays U-box domain-containing protein 35 (LOC103632728), mRNA	NA	coding protein	psRNATarget
XM_008658331.2	ncRNA:24   UUAGGGGAAGUUAGAUAUACCUAA   1   =|||||||||||||*||||||||| targets:1700   GAUCCCCUUCAAUCCAUAUGGAUU   1723 Target Full Sequence	1.5	PREDICTED: Zea mays putative protein phosphatase 2C 46 (LOC103635969), mRNA	NA	coding protein	psRNATarget
EU951843.1	ncRNA:24   UUAGGGGA-AGUUAGAUAUACCUAA   1   |=|==|||-|||||||||||||||| targets:467   AGUUUCCUCUCAAUCUAUAUGGAUU   491 Target Full Sequence	2.0	Zea mays clone 1061479 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008658561.2	ncRNA:24   UUAGGGGAAGUUAGAUAUACCUAA   1   ||||||||*|||||*||||||||| targets:303   AAUCCCCUCCAAUCCAUAUGGAUU   326 Target Full Sequence	2.5	PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase 2 (LOC103636208), mRNA	NA	coding protein	psRNATarget
XM_008680349.2	ncRNA:24   UUAGGGGAAGUUAGAUAUACCUAA   1   |||||||*||||||*||||||||| targets:1971   AAUCCCCCUCAAUCCAUAUGGAUU   1994 Target Full Sequence	2.5	PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU956568.1	ncRNA:24   UUAGGGGAAGUUAGAUAUACCUAA   1   ||||||||*|||||*||||||||| targets:1632   AAUCCCCUCCAAUCCAUAUGGAUU   1655 Target Full Sequence	2.5	Zea mays clone 1566799 mRNA sequence	NA	coding protein	psRNATarget
XM_020548987.1	ncRNA:24   UUAGGGGAAGUUAGAUAUACCUAA   1   ||||||||*|||||*||||||||| targets:1982   AAUCCCCUCCAAUCCAUAUGGAUU   2005 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA	NA	coding protein	psRNATarget
XM_008673290.2	ncRNA:24   UUAGGGGAAGUUAGAUAUACCUAA   1   ||||||||*|||||*||||||||| targets:1982   AAUCCCCUCCAAUCCAUAUGGAUU   2005 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA	NA	coding protein	psRNATarget
EU955707.1	ncRNA:24   UUAGGGGAAGUUAGAUAUACCUAA   1   |||||||*||||||*||||||||| targets:608   AAUCCCCCUCAAUCCAUAUGGAUU   631 Target Full Sequence	2.5	Zea mays clone 1543022 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020545207.1	ncRNA:24   UUAGGGGAAGUUAGAUAUACCUAA   1   ||||||||*|||||*||||||||| targets:24   AAUCCCCUCCAAUCCAUAUGGAUU   47 Target Full Sequence	2.5	PREDICTED: Zea mays solute carrier family 25 member 44 (LOC100384216), mRNA	NA	coding protein	psRNATarget
BT055467.1	ncRNA:24   UUAGGGGAAGUUAGAUAUACCUAA   1   ||||||||*|||||*||||||||| targets:1200   AAUCCCCUCCAAUCCAUAUGGAUU   1223 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020548080.1	ncRNA:24   UUAGGGGAAGUUAGAUAUACCUAA   1   ||||||||*|||||*||||||||| targets:1162   AAUCCCCUCCAAUCCAUAUGGAUU   1185 Target Full Sequence	2.5	PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA	NA	coding protein	psRNATarget
BT068463.1	ncRNA:24   UUAGGGGAAGUUAGAUAUACCUAA   1   |||||||*||||||*||||||||| targets:1211   AAUCCCCCUCAAUCCAUAUGGAUU   1234 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0213N24 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008666525.2	ncRNA:24   UUAGGGGAAGUUAGAUAUACCUAA   1   ||||||||*|||||*||||||||| targets:919   AAUCCCCUCCAAUCCAUAUGGAUU   942 Target Full Sequence	2.5	PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA	NA	coding protein	psRNATarget
BT061531.2	ncRNA:24   UUAGGGGAAGUUAGAUAUACCUAA   1   |||||||*||||||*||||||||| targets:851   AAUCCCCCUCAAUCCAUAUGGAUU   874 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0155L17 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001151506.1	ncRNA:24   UUAGGGGAAGUUAGAUAUACCUAA   1   |||||||*||||||*||||||||| targets:939   AAUCCCCCUCAAUCCAUAUGGAUU   962 Target Full Sequence	2.5	Zea mays ER membrane protein complex subunit 7-like protein (pco145885(696)), mRNA	NA	coding protein	psRNATarget
EU972032.1	ncRNA:24   UUAGGGGAAGUUAGAUAUACCUAA   1   |||||||*||||||*||||||||| targets:939   AAUCCCCCUCAAUCCAUAUGGAUU   962 Target Full Sequence	2.5	Zea mays clone 373636 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU959345.1	ncRNA:24   UUAGGGGAAGUUAGAUAUACCUAA   1   ||||||||*|||||*||||||||| targets:847   AAUCCCCUCCAAUCCAUAUGGAUU   870 Target Full Sequence	2.5	Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959258.1	ncRNA:24   UUAGGGGAAGUUAGAUAUACCUAA   1   ||||||||*|||||*||||||||| targets:846   AAUCCCCUCCAAUCCAUAUGGAUU   869 Target Full Sequence	2.5	Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959053.1	ncRNA:24   UUAGGGGAAGUUAGAUAUACCUAA   1   ||||||||*|||||*||||||||| targets:846   AAUCCCCUCCAAUCCAUAUGGAUU   869 Target Full Sequence	2.5	Zea mays clone 209789 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959055.1	ncRNA:24   UUAGGGGAAGUUAGAUAUACCUAA   1   ||||||||*|||||*||||||||| targets:848   AAUCCCCUCCAAUCCAUAUGGAUU   871 Target Full Sequence	2.5	Zea mays clone 209821 mRNA sequence	NA	coding protein	psRNATarget
BT068594.1	ncRNA:24   UUAGGGGAAGUUAGAUAUACCUAA   1   |||||||*||||||*||||||||| targets:909   AAUCCCCCUCAAUCCAUAUGGAUU   932 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0348O14 mRNA, complete cds	NA	coding protein	psRNATarget
BT062922.1	ncRNA:24   UUAGGGGAAGUUAGAUAUACCUAA   1   ||||||||*|||||*||||||||| targets:900   AAUCCCCUCCAAUCCAUAUGGAUU   923 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds	NA	coding protein	psRNATarget
AY104043.1	ncRNA:24   UUAGGGGAAGUUAGAUAUACCUAA   1   |||||||*||||||*||||||||| targets:912   AAUCCCCCUCAAUCCAUAUGGAUU   935 Target Full Sequence	2.5	Zea mays PCO145885 mRNA sequence	NA	coding protein	psRNATarget
XM_020539810.1	ncRNA:24   UUAGGGGAAGUUAGAUAUACCUAA   1   ||||||||*|||||*||||||||| targets:701   AAUCCCCUCCAAUCCAUAUGGAUU   724 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109940330 (LOC109940330), mRNA	NA	coding protein	psRNATarget
NM_001348011.1	ncRNA:24   UUAGGGGAAGUUAGAUAUACCUAA   1   ||||||||*|||||*||||||||| targets:447   AAUCCCCUCCAAUCCAUAUGGAUU   470 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100277538), mRNA	NA	coding protein	psRNATarget
EU951312.1	ncRNA:24   UUAGGGGAAGUUAGAUAUACCUAA   1   |||||||*||||||*||||||||| targets:372   AAUCCCCCUCAAUCCAUAUGGAUU   395 Target Full Sequence	2.5	Zea mays clone 695515 mRNA sequence	NA	coding protein	psRNATarget
HI409817.1	ncRNA:24   UUAGGGGAAGUUAGAUAUACCUAA   1   |||||||*||||||*||||||||| targets:82   AAUCCCCCUCAAUCCAUAUGGAUU   105 Target Full Sequence	2.5	Sequence 7942 from Patent EP2074227	NA	coding protein	psRNATarget
JB170278.1	ncRNA:24   UUAGGGGAAGUUAGAUAUACCUAA   1   |||||||*||||||*||||||||| targets:82   AAUCCCCCUCAAUCCAUAUGGAUU   105 Target Full Sequence	2.5	Sequence 7942 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241947.1	ncRNA:24   UUAGGGGAAGUUAGAUAUACCUAA   1   |||||||*||||||*||||||||| targets:82   AAUCCCCCUCAAUCCAUAUGGAUU   105 Target Full Sequence	2.5	Sequence 7942 from Patent EP2985353	NA	coding protein	psRNATarget
EU953075.1	ncRNA:24   UUAGGGGAAGUUAGAUAUACCUAA   1   ||||=|||*|||||*||||||||| targets:1010   AAUCUCCUCCAAUCCAUAUGGAUU   1033 Target Full Sequence	2.5	Zea mays clone 1380292 mRNA sequence	NA	coding protein	psRNATarget
XM_008661229.2	ncRNA:24   UUAGGGGAAGUUAGAUAUACCUAA   1   ==|=*==||||||||||||||||| targets:2661   GGUUAUUUUCAAUCUAUAUGGAUU   2684 Target Full Sequence	2.0	PREDICTED: Zea mays kanadaptin (LOC103638266), mRNA	NA	coding protein	psRNATarget
NM_001138093.1	ncRNA:24   UUAGGGGAAGUUAGAUAUACCUAA   1   ||||*||*||||||*||||||||| targets:1610   AAUCACCCUCAAUCCAUAUGGAUU   1633 Target Full Sequence	2.5	Zea mays uncharacterized LOC100192906 (LOC100192906), mRNA	NA	coding protein	psRNATarget
BT035012.1	ncRNA:24   UUAGGGGAAGUUAGAUAUACCUAA   1   ||||*||*||||||*||||||||| targets:1610   AAUCACCCUCAAUCCAUAUGGAUU   1633 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0031M23 mRNA, complete cds	NA	coding protein	psRNATarget
EZ101759.1	ncRNA:24   UUAGGGGAAGUUAGAUAUACCUAA   1   ||*||||*||||||*||||||||| targets:95   AAACCCCCUCAAUCCAUAUGGAUU   118 Target Full Sequence	2.5	TSA: Zea mays contig37415, mRNA sequence	NA	coding protein	psRNATarget