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BaseInfo

ncRNA ID	novel_zma_miR8515
Species	Zea mays
Class	miRNA
Genome position	Chr10:1697813-1697965 [-]
Reference genome	RefGen_v4
Source	SRR4237220
Length	24
Mature sequence(if miRNA)	130 - AAACAAUUGGAUCUAUACCAUUAA - 153
Stem-loop(if miRNA)	AAACAA                        CAA     A   A        GG  CCCAC  G     GACU      G       UUGGAUCUAUACCAUUAAAAGAUC   ACUUU GAU UAUACCAU  AC     AU UCAUU    CAUGUG A       ||||||||||||||||||||||||   ||||| ||| ||||||||  ||     || |||||    ||||||       AAUCUAGGUAUGGUAAUUUUCUAG   UGAAA CUA GUAUGGUA  UG     UA AGUGA    GUACAC C CCUUUA                        UGG     C   G        -A  ----A  G     --AU      C
Stem-loop sequence	AAACAAUUGGAUCUAUACCAUUAAAAGAUCCAAACUUUAGAUAUAUACCAUGGACCCCACAUGUCAUUGACUCAUGUGGACCCACAUGUAAGUGAGAUAGUAAUGGUAUGGAUCCAAAGUGGUGAUCUUUUAAUGGUAUGGAUCUAAAUUUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020542014.1	ncRNA:24   AAUUACCAUAUCUAGGUUAACAAA   1   |||||||||||||||||||||||* targets:23   UUAAUGGUAUAGAUCCAAUUGUUC   46 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100277104 (LOC100277104), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008656647.2	ncRNA:24   AAUUACCAUAUCUAGGUUAACAAA   1   |||||||||||||||||||||||* targets:606   UUAAUGGUAUAGAUCCAAUUGUUC   629 Target Full Sequence	1.0	PREDICTED: Zea mays Jasmonic acid-amido synthetase JAR1 (pco121700), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008663819.2	ncRNA:24   AAUUACCAUAUCUAGGUUAACAAA   1   |||||||||||||||||||||||* targets:2648   UUAAUGGUAUAGAUCCAAUUGUUC   2671 Target Full Sequence	1.0	PREDICTED: Zea mays Chaperone DnaJ-domain superfamily protein (LOC103640598), mRNA	NA	coding protein	psRNATarget
EU957674.1	ncRNA:24   AAUUACCAUAUCUAGGUUAACAAA   1   |||||||||||||||||||||||* targets:1565   UUAAUGGUAUAGAUCCAAUUGUUC   1588 Target Full Sequence	1.0	Zea mays clone 1602824 mRNA sequence	NA	coding protein	psRNATarget
BT018806.1	ncRNA:24   AAUUACCAUAUCUAGGUUAACAAA   1   |||||||||||||||||||||||* targets:1096   UUAAUGGUAUAGAUCCAAUUGUUC   1119 Target Full Sequence	1.0	Zea mays clone EL01N0529G07.d mRNA sequence	NA	coding protein	psRNATarget
XM_008677619.2	ncRNA:24   AAUUACCAUAUCUAGGUUAACAAA   1   |||||||||||||||||||||||* targets:1542   UUAAUGGUAUAGAUCCAAUUGUUC   1565 Target Full Sequence	1.0	PREDICTED: Zea mays Mitochondrial substrate carrier family protein (si606074b10b), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008677625.2	ncRNA:24   AAUUACCAUAUCUAGGUUAACAAA   1   |||||||||||||||||||||||* targets:1536   UUAAUGGUAUAGAUCCAAUUGUUC   1559 Target Full Sequence	1.0	PREDICTED: Zea mays Mitochondrial substrate carrier family protein (si606074b10b), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT083711.1	ncRNA:24   AAUUACCAUAUCUAGGUUAACAAA   1   |||||||||||||||||||||||* targets:851   UUAAUGGUAUAGAUCCAAUUGUUC   874 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0030O20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001177092.1	ncRNA:24   AAUUACCAUAUCUAGGUUAACAAA   1   |||||||||||||||||||||||* targets:851   UUAAUGGUAUAGAUCCAAUUGUUC   874 Target Full Sequence	1.0	Zea mays AUX/IAA transcription factor (AUX17), mRNA	NA	coding protein	psRNATarget
BT070082.1	ncRNA:24   AAUUACCAUAUCUAGGUUAACAAA   1   |||||||||||||||||||||||* targets:878   UUAAUGGUAUAGAUCCAAUUGUUC   901 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0008K03 mRNA, complete cds	NA	coding protein	psRNATarget
BT061333.2	ncRNA:24   AAUUACCAUAUCUAGGUUAACAAA   1   |||||||||||||||||||||||* targets:153   UUAAUGGUAUAGAUCCAAUUGUUC   176 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0136G21 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008656158.2	ncRNA:24   AAUUACCAUAUCUAGGUUAACAAA   1   |||||||||||||||||||||||* targets:57   UUAAUGGUAUAGAUCCAAUUGUUC   80 Target Full Sequence	1.0	PREDICTED: Zea mays cell number regulator 5 (CNR05), transcript variant X8, mRNA	NA	coding protein	psRNATarget
AY103623.1	ncRNA:24   AAUUACCAUAUCUAGGUUAACAAA   1   |||||||||||||||||||||||* targets:738   UUAAUGGUAUAGAUCCAAUUGUUC   761 Target Full Sequence	1.0	Zea mays PCO141453 mRNA sequence	NA	coding protein	psRNATarget
NM_001150698.1	ncRNA:24   AAUUACCAUAUCUAGGUUAACAAA   1   |||||||||||||||||||||||* targets:710   UUAAUGGUAUAGAUCCAAUUGUUC   733 Target Full Sequence	1.0	Zea mays hypothetical protein (pco141453a), mRNA	NA	coding protein	psRNATarget
EU966308.1	ncRNA:24   AAUUACCAUAUCUAGGUUAACAAA   1   |||||||||||||||||||||||* targets:710   UUAAUGGUAUAGAUCCAAUUGUUC   733 Target Full Sequence	1.0	Zea mays clone 293420 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU952279.1	ncRNA:24   AAUUACCAUAUCUAGGUUAACAAA   1   |||||||||||||||||||||||* targets:731   UUAAUGGUAUAGAUCCAAUUGUUC   754 Target Full Sequence	1.0	Zea mays clone 1275160 mRNA sequence	NA	coding protein	psRNATarget
EU962525.1	ncRNA:24   AAUUACCAUAUCUAGGUUAACAAA   1   |||||||||||||||||||||||* targets:709   UUAAUGGUAUAGAUCCAAUUGUUC   732 Target Full Sequence	1.0	Zea mays clone 243450 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU951591.1	ncRNA:24   AAUUACCAUAUCUAGGUUAACAAA   1   |||||||||||||||||||||||* targets:454   UUAAUGGUAUAGAUCCAAUUGUUC   477 Target Full Sequence	1.0	Zea mays clone 896699 mRNA sequence	NA	coding protein	psRNATarget
EZ516602.1	ncRNA:24   AAUUACCAUAUCUAGGUUAACAAA   1   |||||||||||||||||||||||* targets:20   UUAAUGGUAUAGAUCCAAUUGUUC   43 Target Full Sequence	1.0	TSA: Zea mays cultivar W22 CL16Contig2.betc, mRNA sequence	NA	coding protein	psRNATarget
EZ105769.1	ncRNA:24   AAUUACCAUAUCUAGGUUAACAAA   1   |||||||||||||||||||||||* targets:68   UUAAUGGUAUAGAUCCAAUUGUUC   91 Target Full Sequence	1.0	TSA: Zea mays contig41427, mRNA sequence	NA	coding protein	psRNATarget
EZ516965.1	ncRNA:24   AAUUACCAUAUCUAGGUUAACAAA   1   |||||||||||||||||||||||* targets:45   UUAAUGGUAUAGAUCCAAUUGUUC   68 Target Full Sequence	1.0	TSA: Zea mays cultivar W22 CL359Contig1.betc, mRNA sequence	NA	coding protein	psRNATarget
XM_008647507.2	ncRNA:24   AAUUACCAUAUCUAGGUUAACAAA   1   |||||||||||*|||||||||||* targets:1217   UUAAUGGUAUAAAUCCAAUUGUUC   1240 Target Full Sequence	2.5	PREDICTED: Zea mays nudix hydrolase 12, mitochondrial (LOC103627211), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008647508.2	ncRNA:24   AAUUACCAUAUCUAGGUUAACAAA   1   |||||||||||*|||||||||||* targets:1207   UUAAUGGUAUAAAUCCAAUUGUUC   1230 Target Full Sequence	2.5	PREDICTED: Zea mays nudix hydrolase 12, mitochondrial (LOC103627211), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008647506.2	ncRNA:24   AAUUACCAUAUCUAGGUUAACAAA   1   |||||||||||*|||||||||||* targets:1131   UUAAUGGUAUAAAUCCAAUUGUUC   1154 Target Full Sequence	2.5	PREDICTED: Zea mays nudix hydrolase 12, mitochondrial (LOC103627211), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT070046.1	ncRNA:24   AAUUACCAUAUCUAGGUUAACAAA   1   ||||||||||||||||||||*||* targets:1152   UUAAUGGUAUAGAUCCAAUUAUUC   1175 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0376P08 mRNA, complete cds	NA	coding protein	psRNATarget
EU968126.1	ncRNA:24   AAUUACCAUAUCUAGGUUAACAAA   1   |||||||||||||||||*|||||* targets:773   UUAAUGGUAUAGAUCCAUUUGUUC   796 Target Full Sequence	2.5	Zea mays clone 314826 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150925.2	ncRNA:24   AAUUACCAUAUCUAGGUUAACAAA   1   |||||||||||||||||*|||||* targets:772   UUAAUGGUAUAGAUCCAUUUGUUC   795 Target Full Sequence	2.5	Zea mays uncharacterized LOC100277330 (LOC100277330), mRNA	NA	coding protein	psRNATarget
XM_008651251.2	ncRNA:24   AAUUACCAUAUCUAGGUUAACAAA   1   |||**||||*|||||||||||*|| targets:1989   UUACAGGUAGAGAUCCAAUUGAUU   2012 Target Full Sequence	2.5	PREDICTED: Zea mays probable receptor-like protein kinase At2g42960 (LOC103630171), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008651253.2	ncRNA:24   AAUUACCAUAUCUAGGUUAACAAA   1   |||**||||*|||||||||||*|| targets:1989   UUACAGGUAGAGAUCCAAUUGAUU   2012 Target Full Sequence	2.5	PREDICTED: Zea mays probable receptor-like protein kinase At2g42960 (LOC103630171), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020539518.1	ncRNA:24   AAUUACCAUAUCUAGGUUAACAAA   1   |||**||||*|||||||||||*|| targets:1989   UUACAGGUAGAGAUCCAAUUGAUU   2012 Target Full Sequence	2.5	PREDICTED: Zea mays probable receptor-like protein kinase At2g42960 (LOC103630171), transcript variant X2, mRNA	NA	coding protein	psRNATarget